Query: NC_007492:3384077 Pseudomonas fluorescens PfO-1, complete genome
Start: 3384077, End: 3417174, Length: 33098
Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria
General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_020209:1847895* | 1847895 | 1872678 | 24784 | Pseudomonas poae RE*1-1-14, complete genome | 1e-117 | 432 | BLASTN svg | BLASTP svg |
NC_004578:4061372 | 4061372 | 4093997 | 32626 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 2e-112 | 414 | BLASTN svg | BLASTP svg |
NC_002947:4167500 | 4167500 | 4243733 | 76234 | Pseudomonas putida KT2440, complete genome | 9e-106 | 392 | BLASTN svg | BLASTP svg |
NC_004129:4434259 | 4434259 | 4458627 | 24369 | Pseudomonas fluorescens Pf-5, complete genome | 2e-45 | 192 | BLASTN svg | BLASTP svg |
NC_004578:3193490 | 3193490 | 3235118 | 41629 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 6e-42 | 180 | BLASTN svg | BLASTP svg |
NC_004578:1719849* | 1719849 | 1742217 | 22369 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 3e-19 | 105 | BLASTN svg | BLASTP svg |
NC_004578:3849835 | 3849835 | 3872607 | 22773 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 3e-19 | 105 | BLASTN svg | BLASTP svg |
NC_004578:4204235* | 4204235 | 4225454 | 21220 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 3e-19 | 105 | BLASTN svg | BLASTP svg |
NC_015572:2262374 | 2262374 | 2287185 | 24812 | Methylomonas methanica MC09 chromosome, complete genome | 2e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_020209:1949500 | 1949500 | 1976529 | 27030 | Pseudomonas poae RE*1-1-14, complete genome | 1e-12 | 83.8 | BLASTN svg | BLASTP svg |
NC_010512:110932* | 110932 | 137904 | 26973 | Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence | 4e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_007005:98488* | 98488 | 136931 | 38444 | Pseudomonas syringae pv. syringae B728a, complete genome | 2e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_011769:2294387* | 2294387 | 2315651 | 21265 | Desulfovibrio vulgaris str. 'Miyazaki F', complete genome | 7e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_004129:5781413 | 5781413 | 5804975 | 23563 | Pseudomonas fluorescens Pf-5, complete genome | 4e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_009092:1047500* | 1047500 | 1072729 | 25230 | Shewanella loihica PV-4, complete genome | 4e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_011901:1398376 | 1398376 | 1427876 | 29501 | Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_011002:564654 | 564654 | 585353 | 20700 | Burkholderia cenocepacia J2315 chromosome 3, complete sequence | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_008027:2909000 | 2909000 | 2929880 | 20881 | Pseudomonas entomophila L48, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_002939:805794 | 805794 | 828230 | 22437 | Geobacter sulfurreducens PCA, complete genome | 2e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_015572:2541968 | 2541968 | 2564099 | 22132 | Methylomonas methanica MC09 chromosome, complete genome | 6e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_009092:179226* | 179226 | 208087 | 28862 | Shewanella loihica PV-4, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015410:2505168* | 2505168 | 2534045 | 28878 | Pseudomonas mendocina NK-01 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013093:3157897 | 3157897 | 3182093 | 24197 | Actinosynnema mirum DSM 43827, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_006177:1060428 | 1060428 | 1082475 | 22048 | Symbiobacterium thermophilum IAM 14863, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_004578:3241618 | 3241618 | 3265088 | 23471 | Pseudomonas syringae pv. tomato str. DC3000, complete genome | 1e-06 | 63.9 | BLASTN svg | BLASTP svg |
NC_015434:6020178 | 6020178 | 6047192 | 27015 | Verrucosispora maris AB-18-032 chromosome, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_009439:860571* | 860571 | 885491 | 24921 | Pseudomonas mendocina ymp, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_008740:3602367* | 3602367 | 3620727 | 18361 | Marinobacter aquaeolei VT8, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_002696:2829002* | 2829002 | 2855656 | 26655 | Caulobacter crescentus CB15, complete genome | 4e-06 | 61.9 | BLASTN svg | BLASTP svg |