Pre_GI: BLASTP Hits

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Query: NC_007492:4563981:4563981 Pseudomonas fluorescens PfO-1, complete genome

Start: 4563981, End: 4564538, Length: 558

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:4993974:499953349995335000093561Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, TetR family2e-74277
NC_012660:1804610:183376918337691834347579Pseudomonas fluorescens SBW25 chromosome, complete genomeputative TetR family regulatory protein2e-69261
NC_008712:215499:221110221110221676567Arthrobacter aurescens TC1 plasmid TC1, complete sequenceputative Transcriptional regulator, TetR family2e-56218
NC_012969:1442147:145618814561881456784597Methylovorus glucosetrophus SIP3-4 chromosome, complete genomeTetR family transcriptional regulator2e-24112
NC_013929:8474195:850754385075438508133591Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator5e-24110
NC_014837:3739408:374879137487913749378588Pantoea sp. At-9b chromosome, complete genomeTetR family transcriptional regulator2e-23108
NC_007005:830467:845008845008845643636Pseudomonas syringae pv. syringae B728a, complete genomeregulatory protein, TetR2e-23108
NC_011983:1746000:174603617460361746614579Agrobacterium radiobacter K84 chromosome 2, complete genometranscriptional regulator protein2e-22105
NC_012968:1191037:120521612052161205824609Methylotenera mobilis JLW8, complete genometranscriptional regulator, TetR family8e-22103
NC_015953:46732:631566315663755600Streptomyces sp. SirexAA-E chromosome, complete genomeTetR family transcriptional regulator2e-21102
NC_014217:800406:805701805701806249549Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, TetR family4e-21100
NC_016582:1639375:167531116753111675883573Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative TetR family regulator5e-21100
NC_013929:4807910:481708548170854817657573Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator5e-2097.1
NC_015856:4301230:431541643154164316036621Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator7e-2096.7
NC_014539:743523:770361770361770942582Burkholderia sp. CCGE1003 chromosome 1, complete sequenceregulatory protein TetR3e-1994.4
NC_015723:384000:389388389388389915528Cupriavidus necator N-1 chromosome 2, complete sequenceTetR family transcriptional regulator1e-1892.4
NC_010172:4185904:421382142138214214363543Methylobacterium extorquens PA1, complete genomeregulatory protein TetR2e-1892.4
NC_014258:127500:128454128454129002549Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional regulator2e-1892
NC_012988:4633930:466020846602084660750543Methylobacterium extorquens DM4, complete genomeTetR family transcriptional regulator5e-1890.5
NC_002944:1881405:188140518814051882076672Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein7e-1890.1
NC_009832:3500000:350540635054063505966561Serratia proteamaculans 568, complete genometranscriptional regulator, TetR family1e-1789
NC_011663:2568190:258893725889372589494558Shewanella baltica OS223 chromosome, complete genomeTetR family transcriptional regulator5e-1787.4
NC_014310:1086183:109337610933761093957582Ralstonia solanacearum PSI07 megaplasmid, complete sequencetranscriptional regulator, tetr family8e-1786.7
NC_013595:6978614:698322669832266983801576Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family2e-1685.5
NC_014306:642152:655932655932656531600Erwinia billingiae Eb661, complete genomeTranscriptional regulator, TetR family2e-1685.5
NC_013592:1602242:160886316088631609432570Dickeya dadantii Ech586, complete genometranscriptional regulator, TetR family1e-1582.4
NC_013592:3212834:322058632205863221164579Dickeya dadantii Ech586, complete genometranscriptional regulator, TetR family6e-1580.5
NC_018750:6237875:625588762558876256447561Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family6e-1580.5
NC_018868:2935580:295135029513502951889540Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genometranscriptional regulator7e-1580.1
NC_008782:2568027:259582925958292596410582Acidovorax sp. JS42, complete genometranscriptional regulator, TetR family1e-1479.3
NC_004129:3123000:312514131251413125728588Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, TetR family2e-1478.6
NC_016830:1182765:119124511912451191841597Pseudomonas fluorescens F113 chromosome, complete genomeTetR family transcriptional regulator3e-1374.7
NC_007645:5724000:574193757419375742581645Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator9e-1373.2
NC_012560:5276000:528147152814715282031561Azotobacter vinelandii DJ, complete genomeTranscriptional regulatory protein, TetR family9e-1373.2
NC_021150:5234000:523936352393635239923561Azotobacter vinelandii CA6, complete genomeTranscriptional regulatory protein, TetR family9e-1373.2
NC_008314:1275617:129317512931751293768594Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator8e-1373.2
NC_016582:9459566:947325194732519473763513Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transcriptional regulator, TetR family protein2e-1272
NC_010338:588000:588037588037588642606Caulobacter sp. K31, complete genometranscriptional regulator, TetR family1e-1169.7
NC_014310:1086183:109266710926671093143477Ralstonia solanacearum PSI07 megaplasmid, complete sequencetranscriptional regulator, tetr family2e-1168.6
NC_012660:3689223:369128836912883691878591Pseudomonas fluorescens SBW25 chromosome, complete genomeTetR family transcriptional regulator3e-1065.1
NC_007963:3225306:324092132409213241568648Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, TetR family9e-0959.7
NC_009656:1994392:203873320387332039275543Pseudomonas aeruginosa PA7 chromosome, complete genomeputative transcriptional regulator2e-0858.5
NC_014500:1862000:187730718773071877909603Dickeya dadantii 3937 chromosome, complete genomeTetR family transcriptional regulator7e-0857
NC_006138:2630338:265032026503202650934615Desulfotalea psychrophila LSv54, complete genomehypothetical protein4e-0754.7
NC_008269:868000:876378876378876992615Rhodococcus sp. RHA1 plasmid pRHL1, complete sequencetranscriptional regulator, TetR family1e-0652.8
NC_015968:2195645:222134322213432221918576Enterobacter asburiae LF7a chromosome, complete genomeregulatory protein TetR2e-0652
NC_007508:5093365:510727451072745107843570Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative transcriptional regulator, TetR family3e-0651.2
NC_010557:207846:218909218909219496588Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, TetR family4e-0651.2
NC_015690:3477573:348976134897613490366606Paenibacillus mucilaginosus KNP414 chromosome, complete genomeTetR family transcriptional regulator4e-0650.8
NC_016935:4038265:404800040480004048605606Paenibacillus mucilaginosus 3016 chromosome, complete genomeTetR family transcriptional regulator5e-0650.8