Pre_GI: BLASTP Hits

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Query: NC_007384:4530000:4544110 Shigella sonnei Ss046, complete genome

Start: 4544110, End: 4544553, Length: 444

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011725:4600000:460577146057714606202432Bacillus cereus B4264 chromosome, complete genomehypothetical protein2e-1478.2
NC_011772:4565418:457105045710504571481432Bacillus cereus G9842, complete genomehypothetical protein1e-1478.6
NC_016012:16134:230522305223477426Candidatus Arthromitus sp. SFB-rat-Yit, complete genomephnB protein3e-0650.4
NC_021182:3525523:356237535623753562791417Clostridium pasteurianum BC1, complete genomehypothetical protein1e-1375.1
NC_012590:1446500:145215714521571452699543Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein7e-0752.8
NC_019904:1616742:163567216356721636088417Echinicola vietnamensis DSM 17526 chromosome, complete genomehypothetical protein3e-1064.3
NC_020995:477765:509416509416509817402Enterococcus casseliflavus EC20, complete genomehypothetical protein3e-1064.3
NC_012947:4106031:410955341095534109996444Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein1e-82304
NC_008253:4541915:455789645578964558339444Escherichia coli 536, complete genomePhnB protein7e-82301
CU928145:4695932:471004447100444710487444Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein7e-83305
NC_011748:4695932:471004447100444710487444Escherichia coli 55989, complete genomehypothetical protein7e-83305
NC_008563:4656000:467183746718374672280444Escherichia coli APEC O1, complete genomehypothetical protein4e-82302
NC_010468:4305105:430822843082284308671444Escherichia coli ATCC 8739, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase1e-82304
NC_012967:4289929:430411243041124304555444Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein1e-82304
NC_012759:4247865:426205642620564262499444Escherichia coli BW2952 chromosome, complete genomehypothetical protein4e-82302
NC_004431:4867648:488433048843304884773444Escherichia coli CFT073, complete genomePhnB protein6e-82302
NC_009801:4643000:465719546571954657638444Escherichia coli E24377A, complete genomeputative phnB protein7e-83305
NC_009800:4332229:434981643498164350259444Escherichia coli HS, complete genomeputative phnB protein7e-83305
NC_011741:4395156:440915844091584409601444Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-82303
CU928160:4395156:440915844091584409601444Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein2e-82303
NC_011750:4719477:473360947336094733962354Escherichia coli IAI39 chromosome, complete genome2e-64243
NC_000913:4307471:432332143233214323764444Escherichia coli K12, complete genomehypothetical protein1e-82304
CP002516:4431235:443485744348574435300444Escherichia coli KO11, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase1e-82304
NC_016902:4431235:443485744348574435300444Escherichia coli KO11FL chromosome, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase1e-82304
AP010958:5022196:503637950363795036822444Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein2e-82303
NC_013353:5022196:503637950363795036822444Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-82303
NC_013364:5040268:505789950578995058342444Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-82303
NC_002655:5194804:521013052101305210573444Escherichia coli O157:H7 EDL933, complete genomehypothetical protein4e-82302
NC_011353:5240020:525534552553455255788444Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-82302
NC_002695:5164819:518014551801455180588444Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-82302
NC_013008:5196080:521140652114065211849444Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-82302
NC_013941:5013695:502901150290115029454444Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephnB protein4e-82302
NC_011742:4569683:458636545863654586808444Escherichia coli S88 chromosome, complete genomehypothetical protein4e-82302
NC_011415:4582388:459657245965724597015444Escherichia coli SE11 chromosome, complete genomehypothetical protein7e-83305
NC_010498:4656716:467074646707464671189444Escherichia coli SMS-3-5, complete genomeputative phnB protein7e-82301
NC_010473:4409492:442368344236834424126444Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein1e-82304
NC_011751:4795928:481135148113514811794444Escherichia coli UMN026 chromosome, complete genomehypothetical protein4e-82302
CP002185:4566150:458373645837364584179444Escherichia coli W, complete genomeconserved protein2e-82303
AC_000091:4313167:432997643299764330419444Escherichia coli W3110 DNA, complete genomehypothetical protein1e-82304
NC_010556:316996:341418341418341846429Exiguobacterium sibiricum 255-15, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase9e-1682.4
NC_010524:2117347:212224821222482122706459Leptothrix cholodnii SP-6, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase2e-1684.3
NC_016935:4038265:405294340529434053359417Paenibacillus mucilaginosus 3016 chromosome, complete genome3-demethylubiquinone-9 3-methyltransferase6e-2096.3
NC_016935:4233223:430171243017124302158447Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein2e-1064.3
NC_015690:3477573:349470434947043495120417Paenibacillus mucilaginosus KNP414 chromosome, complete genome3-demethylubiquinone-9 3-methyltransferase6e-2096.3
NC_015690:4469775:454540745454074545853447Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein2e-1064.3
NC_013406:4023367:404502240450224045438417Paenibacillus sp. Y412MC10 chromosome, complete genome3-demethylubiquinone-9 3-methyltransferase6e-1992.8
NC_013061:2055000:207284520728452073267423Pedobacter heparinus DSM 2366, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase6e-1062.8
NC_014924:1762995:177789117778911778337447Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeGlyoxalase/bleomycin resistance protein/dioxygenase3e-1580.5
NC_012857:41946:434944349443925432Ralstonia pickettii 12D chromosome 2, complete genome3-demethylubiquinone-9 3-methyltransferase1e-21101
NC_010678:900389:901937901937902368432Ralstonia pickettii 12J chromosome 2, complete sequence3-demethylubiquinone-9 3-methyltransferase1e-21101
NC_014310:607896:629981629981630412432Ralstonia solanacearum PSI07 megaplasmid, complete sequencebleomycin resistance protein4e-23106
NC_007613:4156841:417450141745014174944444Shigella boydii Sb227, complete genomehypothetical protein4e-82302
NC_007606:3842708:384738738473873847830444Shigella dysenteriae Sd197, complete genome1e-80297
NC_016822:4686971:470111847011184701480363Shigella sonnei 53G, complete genomehypothetical protein9e-67251
NC_015436:270820:283960283960284367408Spirochaeta coccoides DSM 17374 chromosome, complete genomeprotein PhnB4e-0650.4
NC_017347:2724313:274519327451932745642450Staphylococcus aureus subsp. aureus T0131 chromosome, completePhnB protein2e-0651.6
NC_007404:1260500:126340712634071263844438Thiobacillus denitrificans ATCC 25259, complete genomePhnB protein1e-1065.5