Pre_GI: BLASTP Hits

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Query: NC_007384:4530000:4542148 Shigella sonnei Ss046, complete genome

Start: 4542148, End: 4543164, Length: 1017

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:4686971:4699075469907547000911017Shigella sonnei 53G, complete genomeperiplasmic binding protein component of Pn transporter0653
NC_000913:4307471:4321359432135943223751017Escherichia coli K12, complete genomephosphonate/organophosphate ester transporter subunit0650
CU928160:4395156:4407196440719644082121017Escherichia coli IAI1 chromosome, complete genomephosphonate/organophosphate ester transporter subunit ; periplasmic binding component of ABC superfamily0650
NC_007613:4156841:4172539417253941735551017Shigella boydii Sb227, complete genomeperiplasmic binding protein component of Pn transporter0650
AC_000091:4313167:4328014432801443290301017Escherichia coli W3110 DNA, complete genomephosphonate/organophosphate ester transporter subunit0650
CU928145:4695932:4708082470808247090981017Escherichia coli 55989 chromosome, complete genomephosphonate/organophosphate ester transporter subunit ; periplasmic binding component of ABC superfamily0650
NC_009801:4643000:4655233465523346562491017Escherichia coli E24377A, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein0650
CP002185:4566150:4581774458177445827901017Escherichia coli W, complete genomephosphonate/organophosphate ester transporter subunit0650
NC_009800:4332229:4347854434785443488701017Escherichia coli HS, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein0650
CP002516:4431235:4436246443624644372621017Escherichia coli KO11, complete genomephosphonate ABC transporter, periplasmic phosphonate binding protein0650
NC_011748:4695932:4708082470808247090981017Escherichia coli 55989, complete genomephosphonate/organophosphate ester transporter subunit ; periplasmic binding component of ABC superfamily0650
NC_016902:4431235:4436246443624644372621017Escherichia coli KO11FL chromosome, complete genomephosphonate ABC transporter substrate-binding protein0650
NC_013364:5040268:5055937505593750569531017Escherichia coli O111:H- str. 11128, complete genomephosphonate/organophosphate ester transporter subunit PhnD0650
NC_013353:5022196:5034417503441750354331017Escherichia coli O103:H2 str. 12009, complete genomephosphonate/organophosphate ester transporter subunit PhnD0650
NC_012759:4247865:4260094426009442611101017Escherichia coli BW2952 chromosome, complete genomephosphonate/organophosphate ester transporter subunit0650
NC_011741:4395156:4407196440719644082121017Escherichia coli IAI1 chromosome, complete genomephosphonate/organophosphate ester ABC transporter periplasmic-binding protein0650
NC_011415:4582388:4594610459461045956261017Escherichia coli SE11 chromosome, complete genomephosphonate ABC transporter substrate binding component0650
AP010958:5022196:5034417503441750354331017Escherichia coli O103:H2 str. 12009 DNA, complete genomephosphonate/organophosphate ester transporter subunit PhnD0650
NC_010473:4409492:4421721442172144227371017Escherichia coli str. K-12 substr. DH10B, complete genomephosphonate/organophosphate ester transporter subunit; periplasmic binding component of ABC superfamily0650
NC_011750:4719477:4731623473162347326391017Escherichia coli IAI39 chromosome, complete genomephosphonate/organophosphate ester ABC transporter periplasmic binding protein0648
NC_010468:4305105:4309617430961743106331017Escherichia coli ATCC 8739, complete genomephosphonate ABC transporter, periplasmic phosphonate binding protein0648
NC_010498:4656716:4668784466878446698001017Escherichia coli SMS-3-5, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein0648
NC_012947:4106031:4110942411094241119581017Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephosphonate ABC transporter substrate-binding protein0648
NC_012967:4289929:4302150430215043031661017Escherichia coli B str. REL606 chromosome, complete genomephosphonate/organophosphate ester transporter subunit0648
NC_011751:4795928:4809389480938948104051017Escherichia coli UMN026 chromosome, complete genomephosphonate/organophosphate ester ABC transporter periplasmic binding protein0647
NC_002695:5164819:5178183517818351791991017Escherichia coli O157:H7 str. Sakai, complete genomeperiplasmic binding protein component of Pn transporter0644
NC_002655:5194804:5208168520816852091841017Escherichia coli O157:H7 EDL933, complete genomeperiplasmic binding protein component of Pn transporter0644
NC_011353:5240020:5253383525338352543991017Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephosphonate ABC transporter periplasmic phosphonate-binding protein0644
NC_013008:5196080:5209444520944452104601017Escherichia coli O157:H7 str. TW14359 chromosome, complete genomephosphonate ABC transporter substrate-binding protein0644
NC_008253:4541915:4555934455593445569501017Escherichia coli 536, complete genomePhnD protein0644
NC_013941:5013695:5027049502704950280651017Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphonate ABC transporter substrate-binding protein0642
NC_007606:3842708:3848776384877638497921017Shigella dysenteriae Sd197, complete genomeperiplasmic binding protein component of Pn transporter0641
NC_011742:4569683:4584403458440345854191017Escherichia coli S88 chromosome, complete genomephosphonate/organophosphate ester transporter subunit ; periplasmic binding component of ABC superfamily0640
NC_008563:4656000:4669875466987546708911017Escherichia coli APEC O1, complete genomePhnD, subunit of alkylphosphonate ABC transporter0640
NC_004431:4867648:4882368488236848833841017Escherichia coli CFT073, complete genomePhosphonates-binding periplasmic protein precursor0639
NC_014118:1331164:134478813447881345765978Burkholderia sp. CCGE1002 chromosome chromosome 2, completephosphonate ABC transporter, periplasmic phosphonate binding protein4e-85314
NC_008312:7635217:763521776352177636134918Trichodesmium erythraeum IMS101, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein8e-30131
NC_015563:4773415:479700147970014797888888Delftia sp. Cs1-4 chromosome, complete genomephosphonate ABC transporter periplasmic phosphonate-binding protein7e-25114
NC_011983:760113:760113760113761018906Agrobacterium radiobacter K84 chromosome 2, complete genomephosphonate ABC transporter5e-22105
NC_008800:3123495:312934531293453130274930Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative substrate-binding periplasmic transport protein2e-20100
NC_015224:1641819:165641516564151657344930Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative substrate-binding periplasmic transport protein2e-20100
NC_008740:1414926:143625514362551437118864Marinobacter aquaeolei VT8, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein3e-1789.7
NC_012731:1088321:111127411112741112200927Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomephosphonate ABC transport system periplasmic phosphonate-binding component5e-1789
NC_009649:16907:358023580236665864Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,ABC-type phosphate/phosphonate transport system, periplasmic component9e-1788.2
NC_010002:2933909:294487329448732945751879Delftia acidovorans SPH-1, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein1e-1687.8
NC_007973:3240866:325173132517313252609879Ralstonia metallidurans CH34 chromosome 1, complete sequencePhosphonate-binding periplasmic protein1e-1687.8
NC_013744:159861:177327177327178217891Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completephosphonate ABC transporter, periplasmic phosphonate-binding protein5e-1685.5
NC_009138:3153576:317292331729233173783861Herminiimonas arsenicoxydans, complete genomephosphite transport system binding protein ptxB precursor6e-1685.1
NC_009659:3384997:340802434080243408884861Janthinobacterium sp. Marseille chromosome, complete genomephosphonate ABC-type transport system substrate-binding protein6e-1685.1
NC_010511:3233884:323388432338843234813930Methylobacterium sp. 4-46 chromosome, complete genomephosphonate ABC transporter periplasmic phosphonate binding protein1e-1584
NC_015422:2078618:208943220894322090292861Alicycliphilus denitrificans K601 chromosome, complete genomephosphonate ABC transporter periplasmic phosphonate-binding protein3e-1582.8
NC_006395:217139:243801243801244676876Haloarcula marismortui ATCC 43049 plasmid pNG700, completephosphate ABC transporter phosphate-binding protein1e-1481.3
NC_007760:535825:541082541082541933852Anaeromyxobacter dehalogenans 2CP-C, complete genomeABC phosphonate-binding periplasmic protein6e-1478.6
NC_013939:1460142:147066214706621471519858Deferribacter desulfuricans SSM1, complete genomephosphate/phosphonate ABC transporter substrate-binding protein7e-1478.2
NC_015425:2528549:2538760253876025406521893Clostridium botulinum BKT015925 chromosome, complete genomemethyl-accepting chemotaxis protein9e-1477.8
NC_004193:375416:629961629961630923963Oceanobacillus iheyensis HTE831, complete genomealkylphosphonate ABC tranporter phosphate-binding protein2e-1273.6
NC_012811:1138897:114185211418521142724873Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative phosphonate transport system substrate-binding protein2e-1273.6
NC_008593:2281896:2288423228842322903271905Clostridium novyi NT, complete genomemethyl-accepting chemotaxis protein5e-1272
NC_012560:1965251:196687219668721967723852Azotobacter vinelandii DJ, complete genomePhosphonate ABC transporter, substrate-binding protein6e-1168.6
NC_021150:1965264:196688519668851967736852Azotobacter vinelandii CA6, complete genomePhosphonate ABC transporter, substrate-binding protein6e-1168.6
NC_013173:2261396:228655022865502287473924Desulfomicrobium baculatum DSM 4028, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein1e-1067.8
NC_009439:3535152:353617835361783537029852Pseudomonas mendocina ymp, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein2e-1067
NC_010334:3040589:305999230599923060846855Shewanella halifaxensis HAW-EB4, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein6e-0962
NC_007925:4294472:429698142969814297946966Rhodopseudomonas palustris BisB18, complete genomePhosphonate-binding periplasmic protein2e-0860.5
NC_011662:386162:439011439011439913903Thauera sp. MZ1T, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein3e-0859.7
NC_010501:4787963:480643248064324807286855Pseudomonas putida W619, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein5e-0858.9
NC_008358:2574343:258071125807112581634924Hyphomonas neptunium ATCC 15444, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein5e-0858.9
NC_018664:1:162511625117177927Clostridium acidurici 9a chromosome, complete genomeABC phosphonate transporter periplasmic phosphonate-binding protein9e-0858.2
NC_007492:2771021:278739127873912788242852Pseudomonas fluorescens PfO-1, complete genomePhosphonate-binding periplasmic protein2e-0757
NC_007298:2769525:280262928026292803507879Dechloromonas aromatica RCB, complete genomePhosphonate-binding periplasmic protein2e-0757
NC_014727:186000:186002186002186943942Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,ABC phosphate/phosphonate transporter, periplasmic component2e-0757
NC_014761:417377:423091423091423978888Oceanithermus profundus DSM 14977 chromosome, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein3e-0756.6
NC_009720:4367584:438554843855484386516969Xanthobacter autotrophicus Py2, complete genomephosphonate ABC transporter, periplasmic phosphonate-binding protein2e-0653.5
NC_007907:4692336:471060247106024711510909Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-0653.1