Pre_GI: BLASTP Hits

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Query: NC_007384:4530000:4534882 Shigella sonnei Ss046, complete genome

Start: 4534882, End: 4536018, Length: 1137

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:4686971:4691809469180946929451137Shigella sonnei 53G, complete genomephosphonate metabolism protein PhnM0724
NC_013353:5022196:5027171502717150283071137Escherichia coli O103:H2 str. 12009, complete genomecarbon-phosphorus lyase complex subunit PhnM0717
AP010958:5022196:5027171502717150283071137Escherichia coli O103:H2 str. 12009 DNA, complete genomecarbon-phosphorus lyase complex subunit PhnM0717
NC_010498:4656716:4661579466157946627151137Escherichia coli SMS-3-5, complete genomephosphonate metabolism protein PhnM0717
NC_009801:4643000:4647968464796846491041137Escherichia coli E24377A, complete genomephosphonate metabolism protein PhnM0716
NC_012947:4106031:4118068411806841192041137Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephosphonate metabolism protein PhnM0715
NC_013941:5013695:5019803501980350209391137Escherichia coli O55:H7 str. CB9615 chromosome, complete genomephosphonate metabolism protein PhnM0715
CP002185:4566150:4574573457457345757091137Escherichia coli W, complete genomecarbon-phosphorus lyase complex subunit0715
NC_009800:4332229:4340652434065243417881137Escherichia coli HS, complete genomephosphonate metabolism protein PhnM0715
CU928160:4395156:4399994439999444011301137Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit0715
NC_011415:4582388:4587364458736445885001137Escherichia coli SE11 chromosome, complete genomephosphonate metabolism protein0715
NC_011741:4395156:4399994439999444011301137Escherichia coli IAI1 chromosome, complete genomecarbon-phosphorus lyase complex subunit0715
NC_010468:4305105:4316743431674343178791137Escherichia coli ATCC 8739, complete genomephosphonate metabolism protein PhnM0715
NC_012759:4247865:4252840425284042539761137Escherichia coli BW2952 chromosome, complete genomecarbon-phosphorus lyase complex subunit0714
NC_010473:4409492:4414467441446744156031137Escherichia coli str. K-12 substr. DH10B, complete genomecarbon-phosphorus lyase complex subunit0714
NC_000913:4307471:4314105431410543152411137Escherichia coli K12, complete genomecarbon-phosphorus lyase complex subunit0714
CP002516:4431235:4443380444338044445161137Escherichia coli KO11, complete genomephosphonate metabolism protein PhnM0714
AC_000091:4313167:4320760432076043218961137Escherichia coli W3110 DNA, complete genomecarbon-phosphorus lyase complex subunit0714
NC_012967:4289929:4294904429490442960401137Escherichia coli B str. REL606 chromosome, complete genomecarbon-phosphorus lyase complex subunit0714
NC_016902:4431235:4443380444338044445161137Escherichia coli KO11FL chromosome, complete genomephosphonate metabolism protein PhnM0714
NC_011750:4719477:4724350472435047254861137Escherichia coli IAI39 chromosome, complete genomecarbon-phosphorus lyase complex subunit0714
CU928145:4695932:4700770470077047019061137Escherichia coli 55989 chromosome, complete genomecarbon-phosphorus lyase complex subunit0714
NC_011748:4695932:4700770470077047019061137Escherichia coli 55989, complete genomecarbon-phosphorus lyase complex subunit0714
NC_013364:5040268:5048691504869150498271137Escherichia coli O111:H- str. 11128, complete genomecarbon-phosphorus lyase complex subunit PhnM0714
NC_011751:4795928:4802188480218848033241137Escherichia coli UMN026 chromosome, complete genomecarbon-phosphorus lyase complex subunit0714
NC_002695:5164819:5170937517093751720731137Escherichia coli O157:H7 str. Sakai, complete genomePhnM0713
NC_002655:5194804:5200922520092252020581137Escherichia coli O157:H7 EDL933, complete genomephosphonate metabolism0713
NC_011353:5240020:5246137524613752472731137Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephosphonate metabolism protein PhnM0713
NC_013008:5196080:5202198520219852033341137Escherichia coli O157:H7 str. TW14359 chromosome, complete genomecarbon-phosphorus lyase complex subunit0713
NC_007613:4156841:4165279416527941664151137Shigella boydii Sb227, complete genomePhnM0713
NC_008253:4541915:4548688454868845498241137Escherichia coli 536, complete genomeHisM-like integral membrane protein PhnM0712
NC_004431:4867648:4875122487512248762581137Escherichia coli CFT073, complete genomePhnM protein0710
NC_008563:4656000:4662629466262946637651137Escherichia coli APEC O1, complete genomePhnM, carbon-phosphorus lyase complex subunit0707
NC_011742:4569683:4577157457715745782931137Escherichia coli S88 chromosome, complete genomecarbon-phosphorus lyase complex subunit0707
NC_007606:3842708:3855889385588938569411053Shigella dysenteriae Sd197, complete genomephosphonate metabolism0640
NC_012917:569856:5698565698565709921137Pectobacterium carotovorum subsp. carotovorum PC1, complete genomephosphonate metabolism protein PhnM3e-128458
NC_008463:1756434:1756434175643417575971164Pseudomonas aeruginosa UCBPP-PA14, complete genomephosphonate metabolism protein2e-99362
NC_008786:3291700:3313946331394633151061161Verminephrobacter eiseniae EF01-2, complete genomephosphonate metabolism protein PhnM9e-80297
NC_003911:480202:4814694814694826111143Silicibacter pomeroyi DSS-3, complete genomealkylphosphonate utilization protein PhnM1e-64247
NC_011206:1917408:1920797192079719219331137Acidithiobacillus ferrooxidans ATCC 53993, complete genomephosphonate metabolism protein PhnM6e-61234
NC_011761:2031876:2035265203526520364011137Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completephnM protein6e-61234
NC_007520:2305610:2305610230561023067731164Thiomicrospira crunogena XCL-2, complete genomeamidohydrolase-like2e-54213
NC_008740:257434:2590342590342601821149Marinobacter aquaeolei VT8, complete genomeAmidohydrolase 36e-49195
NC_008312:7635217:7644229764422976453771149Trichodesmium erythraeum IMS101, complete genomephosphonate metabolism protein PhnM5e-47188
NC_020388:884935:8856638856638868231161Natronomonas moolapensis 8.8.11 complete genomephosphonate metabolism protein PhnM4e-44179
NC_015391:504227:5130555130555142331179Carnobacterium sp. 17-4 chromosome, complete genomeprotein PhnM5e-42172
NC_021182:3525523:3534511353451135356861176Clostridium pasteurianum BC1, complete genomephosphonate metabolism protein PhnM5e-41168
NC_015944:384119:3938173938173949621146Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequencephosphonate metabolism protein3e-35149