Pre_GI: BLASTP Hits

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Query: NC_007384:4095016:4106927 Shigella sonnei Ss046, complete genome

Start: 4106927, End: 4108435, Length: 1509

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3935185:3950954395095439525701617Shigella flexneri 2002017 chromosome, complete genomeTransposon Tn7 transposition protein tnsE01005
NC_014844:2721746:2736356273635627379571602Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometransposon Tn7 transposition regulatory protein TnsE5e-51202
NC_006512:2789098:2807290280729028086001311Idiomarina loihiensis L2TR, complete genomeTransposon Tn7 transposition transposition regulatory protein tnsE1e-46188
NC_015851:89006:1010081010081026061599Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposon Tn7 transposition regulatory protein TnsE3e-45183
NC_009052:5089963:5095833509583350974341602Shewanella baltica OS155, complete genomehypothetical protein1e-44181
NC_015572:4916430:4928083492808349296781596Methylomonas methanica MC09 chromosome, complete genomehypothetical protein7e-42172
NC_015740:4508375:4513551451355145151731623Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein3e-1996.7
NC_007498:3399478:3410256341025634117311476Pelobacter carbinolicus DSM 2380, complete genometransposition regulatory protein7e-1168.9
NC_010995:4525119:4543994454399445455951602Cellvibrio japonicus Ueda107, complete genomeTn7-Cj, transposition protein TnsE7e-1065.9
NC_007645:7136956:7185208718520871868661659Hahella chejuensis KCTC 2396, complete genomehypothetical protein6e-0652.8