Pre_GI: BLASTP Hits

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Query: NC_007384:3956465:3978659 Shigella sonnei Ss046, complete genome

Start: 3978659, End: 3980203, Length: 1545

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:88500:1102041102041118921689Escherichia coli KO11FL chromosome, complete genomephosphoglycerate mutase01060
CP002516:88500:1102041102041118921689Escherichia coli KO11, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent01060
NC_016822:4093000:4115579411557941171231545Shigella sonnei 53G, complete genomephosphoglyceromutase01059
NC_012947:94930:1168671168671184111545Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephosphoglyceromutase01059
NC_010468:80000:1017751017751033191545Escherichia coli ATCC 8739, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent01059
NC_013361:4991020:5013813501381350153571545Escherichia coli O26:H11 str. 11368 chromosome, complete genomephosphoglyceromutase01057
AC_000091:3827856:3853611385361138551551545Escherichia coli W3110 DNA, complete genomephosphoglycero mutase III, cofactor-independent01054
AP010958:4668181:4690962469096246925061545Escherichia coli O103:H2 str. 12009 DNA, complete genomephosphoglycero mutase III, cofactor-independent01054
NC_013353:4668181:4690962469096246925061545Escherichia coli O103:H2 str. 12009, complete genomephosphoglycero mutase III, cofactor-independent01054
NC_004337:3590323:3757856375785637594001545Shigella flexneri 2a str. 301, complete genomephosphoglyceromutase01053
NC_004741:3992384:4015817401581740173611545Shigella flexneri 2a str. 2457T, complete genomephosphoglyceromutase01053
NC_008258:3995553:4019848401984840214941647Shigella flexneri 5 str. 8401, complete genomeputative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase01053
NC_016831:3875134:3899174389917439007181545Salmonella enterica subsp. enterica serovar Gallinarum/pullorum2,3-bisphosphoglycerate-independent phosphoglycerate mutase01015
NC_011274:3894387:3918426391842639199701545Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91phosphoglyceromutase01015
NC_016832:3900000:3924325392432539258691545Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,2,3-bisphosphoglycerate-independent phosphoglycerate mutase01013
NC_013716:4408201:4433057443305744346011545Citrobacter rodentium ICC168, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase0998
NC_003198:3924952:3950029395002939515521524Salmonella enterica subsp. enterica serovar Typhi str. CT18,phosphoglyceromutase0998
NC_004631:3910451:3935528393552839370511524Salmonella enterica subsp. enterica serovar Typhi Ty2, completephosphoglyceromutase0998
NC_010067:3846962:3869669386966938711921524Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0996
NC_020063:97436:1189341189341204811548Enterobacteriaceae bacterium strain FGI 57, complete genomephosphoglycerate mutase0978
NC_011753:206178:2298432298432313751533Vibrio splendidus LGP32 chromosome 1, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase0760
NC_008577:44184:6022660226617701545Shewanella sp. ANA-3 chromosome 1, complete sequencephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent0704
NC_007645:1336227:1363216136321613647601545Hahella chejuensis KCTC 2396, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase0678
NC_015519:2045935:2055552205555220570871536Tepidanaerobacter sp. Re1 chromosome, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase1e-161570
NC_007520:2128178:2147338214733821489031566Thiomicrospira crunogena XCL-2, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent2e-159562
NC_019970:1991944:2006134200613420076751542Thermoanaerobacterium thermosaccharolyticum M0795, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase9e-159560
NC_015555:863173:8651278651278666681542Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete2,3-bisphosphoglycerate-independent phosphoglycerate mutase3e-157555
NC_017986:4790482:4805720480572048072491530Pseudomonas putida ND6 chromosome, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase3e-157555
NC_020291:5641444:5647621564762156491591539Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmI8e-157553
NC_015565:128350:1323221323221338751554Desulfotomaculum carboxydivorans CO-1-SRB chromosome, complete2,3-bisphosphoglycerate-independent phosphoglycerate mutase4e-156551
NC_009697:256354:2635782635782651071530Clostridium botulinum A str. ATCC 19397 chromosome, completephosphoglyceromutase1e-155550
NC_014253:1818000:1834352183435218359261575Methanohalobium evestigatum Z-7303 chromosome, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent2e-155549
NC_008593:555463:5659405659405674751536Clostridium novyi NT, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase2e-155548
NC_016627:1342172:1346674134667413482121539Clostridium clariflavum DSM 19732 chromosome, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase4e-155548
NC_009454:2801808:2819278281927828209151638Pelotomaculum thermopropionicum SI, complete genomephosphoglyceromutase1e-154546
NC_010674:3141228:3160581316058131621191539Clostridium botulinum B str. Eklund 17B, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase2e-154545
NC_015737:2691246:2708657270865727102041548Clostridium sp. SY8519, complete genomehypothetical protein7e-153540
NC_015425:604842:6164816164816180251545Clostridium botulinum BKT015925 chromosome, complete genomephosphoglycerate mutase7e-153540
NC_014614:757381:7640467640467655691524Clostridium sticklandii, complete genomephosphoglycero mutase III, cofactor-independent2e-151536
NC_016629:3629848:3648942364894236505191578Desulfovibrio africanus str. Walvis Bay chromosome, complete2,3-bisphosphoglycerate-independent phosphoglycerate mutase2e-151535
NC_009253:139014:1420771420771436271551Desulfotomaculum reducens MI-1 chromosome, complete genomephosphoglyceromutase6e-148524
NC_018870:705900:7078967078967094371542Thermacetogenium phaeum DSM 12270 chromosome, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmI6e-148524
NC_013216:4097056:4108199410819941097401542Desulfotomaculum acetoxidans DSM 771, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate- independent1e-147523
NC_010718:2116889:2125754212575421273011548Natranaerobius thermophilus JW/NM-WN-LF, complete genomephosphoglycerate mutase1e-146520
NC_014206:3209500:3222607322260732241421536Geobacillus sp. C56-T3 chromosome, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent4e-144511
NC_004557:363628:3706983706983722391542Clostridium tetani E88, complete genomephosphoglyceromutase4e-144511
NC_014328:4249032:4257299425729942588341536Clostridium ljungdahlii ATCC 49587 chromosome, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase3e-143508
NC_011772:4994500:5004500500450050060291530Bacillus cereus G9842, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent7e-141501
NC_016779:4825599:4833056483305648345851530Bacillus cereus F837/76 chromosome, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase1e-140500
NC_012472:4867210:4874681487468148762101530Bacillus cereus 03BB102, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent1e-140500
NC_008600:4868000:4872905487290548744341530Bacillus thuringiensis str. Al Hakam, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase1e-140500
NC_011658:4866184:4873789487378948753181530Bacillus cereus AH187 chromosome, complete genomephosphoglyceromutase2e-140499
NC_011969:4802500:4807420480742048089491530Bacillus cereus Q1 chromosome, complete genomephosphoglyceromutase2e-140499
NC_016771:4821000:4826112482611248276411530Bacillus cereus NC7401, complete genomephosphoglycerate mutase2e-140499
NC_017200:4915780:4923234492323449247631530Bacillus thuringiensis serovar finitimus YBT-020 chromosome,phosphoglyceromutase2e-140499
NC_009674:3732000:3738556373855637400851530Bacillus cytotoxicus NVH 391-98 chromosome, complete genomephosphoglyceromutase5e-140498
NC_006274:4910465:4918078491807849196071530Bacillus cereus E33L, complete genomephosphoglyceromutase1e-139497
NC_005957:4850659:4865556486555648670851530Bacillus thuringiensis serovar konkukian str. 97-27, completephosphoglyceromutase1e-139497
NC_004722:5027762:5039036503903650405651530Bacillus cereus ATCC 14579, complete genomephosphoglyceromutase1e-139497
NC_011725:5043198:5050735505073550522641530Bacillus cereus B4264 chromosome, complete genomephosphoglyceromutase1e-139497
NC_003997:4852332:4859710485971048612391530Bacillus anthracis str. Ames, complete genomephosphoglyceromutase8e-140497
NC_005945:4854951:4861047486104748625761530Bacillus anthracis str. Sterne, complete genomephosphoglyceromutase8e-140497
NC_003909:4831000:4836124483612448376531530Bacillus cereus ATCC 10987, complete genomephosphoglyceromutase8e-140497
NC_007530:4853740:4859836485983648613651530Bacillus anthracis str. 'Ames Ancestor', complete genomephosphoglyceromutase8e-140497
NC_012581:4856620:4862159486215948636881530Bacillus anthracis str. CDC 684 chromosome, complete genomephosphoglyceromutase8e-140497
NC_012659:4853640:4859736485973648612651530Bacillus anthracis str. A0248, complete genomephosphoglyceromutase8e-140497
NC_010184:4879552:4891819489181948933481530Bacillus weihenstephanensis KBAB4, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent2e-139496
NC_014335:4800500:4810714481071448122431530Bacillus cereus biovar anthracis str. CI chromosome, completephosphoglyceromutase2e-139496
NC_011773:4914601:4922204492220449237331530Bacillus cereus AH820 chromosome, complete genomephosphoglyceromutase1e-139496
NC_013192:1886337:1890364189036418918991536Leptotrichia buccalis DSM 1135, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate- independent3e-139495
NC_017208:5096759:5104309510430951058381530Bacillus thuringiensis serovar chinensis CT-43 chromosome, completephosphoglyceromutase3e-139495
NC_013939:1902397:1918435191843519199521518Deferribacter desulfuricans SSM1, complete genomephosphoglycerate mutase1e-135483
NC_007519:1782067:1814056181405618155971542Desulfovibrio alaskensis G20 chromosome, complete genomephosphoglyceromutase9e-135480
NC_016941:807155:8193848193848209011518Staphylococcus aureus subsp. aureus MSHR1132, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase4e-133475
NC_009487:866000:8777348777348792511518Staphylococcus aureus subsp. aureus JH9 chromosome, completephosphoglyceromutase7e-133474
NC_017353:2129738:2137356213735621388761521Staphylococcus lugdunensis N920143, complete genomeputative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase1e-132473
NC_007513:513806:5269555269555285921638Synechococcus sp. CC9902, complete genomephosphoglyceromutase2e-132473
NC_008095:1428665:1448731144873114502721542Myxococcus xanthus DK 1622, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase3e-132472
NC_007516:1974500:1979042197904219806791638Synechococcus sp. CC9605, complete genomephosphoglyceromutase4e-132471
NC_014221:169996:1894971894971910291533Truepera radiovictrix DSM 17093 chromosome, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent6e-132471
NC_007350:1971762:1979303197930319808201518Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,phosphoglycerate mutase1e-131470
NC_020409:363114:3682673682673697961530Desulfovibrio piezophilus str. nov C1TLV30 chromosome, complete2,3-bisphosphoglycerate-independent phosphoglycerate mutase7e-131467
NC_003911:4001094:4023983402398340255001518Silicibacter pomeroyi DSS-3, complete genomephosphoglyceromutase1e-128460
NC_013037:5263272:5287987528798752895191533Dyadobacter fermentans DSM 18053, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate- independent4e-125448
NC_014171:4933200:4940460494046049418181359Bacillus thuringiensis BMB171 chromosome, complete genomephosphoglyceromutase2e-122439
NC_020125:1545578:1564905156490515664341530Riemerella anatipestifer RA-CH-2, complete genomePhosphoglyceromutase1e-117423
NC_007426:930357:9572829572829588021521Natronomonas pharaonis DSM 2160, complete genomephosphoglyceromutase4e-116418
NC_009850:1862602:1900736190073619022111476Arcobacter butzleri RM4018, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent5e-114411
NC_017187:1757934:1778843177884317803181476Arcobacter butzleri ED-1, complete genomephosphoglyceromutase8e-114411
NC_017192:2548933:2567327256732725688021476Arcobacter sp. L, complete genomephosphoglyceromutase8e-111401
NC_013009:809681:8140828140828155541473Neorickettsia risticii str. Illinois, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase2e-110399
NC_013418:397956:4179044179044194421539Blattabacterium sp. (Periplaneta americana) str. BPLAN, completephosphoglyceromutase7e-110398
NC_020195:234392:2388902388902404281539Blattabacterium sp. (Blatta orientalis) str. Tarazona, completephosphoglycerate mutase5e-109395
NC_008599:1325155:1342252134225213437151464Campylobacter fetus subsp. fetus 82-40, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase3e-109395
NC_014166:2621500:2642018264201826434931476Arcobacter nitrofigilis DSM 7299 chromosome, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent6e-108391
NC_016146:360455:3815383815383831091572Blattabacterium sp. (Mastotermes darwiniensis) str. MADARphosphoglyceromutase3e-106385
NC_016621:224700:2270882270882286591572Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu chromosome,phosphoglycerate mutase2e-105382
NC_005090:1921154:1934561193456119360391479Wolinella succinogenes DSM 1740, complete genomephosphoglyceromutase6e-105381
NC_009802:1570215:1570215157021515716781464Campylobacter concisus 13826, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase2e-104380
NC_017280:387760:4015394015394030171479Campylobacter jejuni subsp. jejuni M1 chromosome, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase4e-104378
NC_008787:390215:4039814039814054591479Campylobacter jejuni subsp. jejuni 81-176, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase8e-104377
NC_014802:392852:4066434066434081211479Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, complete2,3-bisphosphoglycerate-independent phosphoglycerate mutase8e-104377
NC_002163:388595:4022854022854037631479Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomephosphoglyceromutase3e-103375
NC_013454:229587:2341082341082356521545Blattabacterium sp. (Blattella germanica) str. Bge, completephosphoglycerate mutase5e-103375
NC_003912:426676:4404624404624419401479Campylobacter jejuni RM1221, complete genomephosphoglyceromutase6e-103375
NC_017279:393255:4069364069364084141479Campylobacter jejuni subsp. jejuni IA3902 chromosome, completephosphoglyceromutase1e-102374
NC_017281:388610:4024304024304039081479Campylobacter jejuni subsp. jejuni S3 chromosome, complete genome2,3-bisphosphoglycerate-independent phosphoglycerate mutase2e-102373
NC_015385:2135456:2139221213922121408851665Treponema succinifaciens DSM 2489 chromosome, complete genomephosphoglycerate mutase, 2,3-bisphosphoglycerate-independent7e-86318
NC_013410:921187:9211879211879228211635Fibrobacter succinogenes subsp. succinogenes S85 chromosome,phosphoglyceromutase2e-84313
NC_020134:2237421:2253172225317222548121641Clostridium stercorarium subsp. stercorarium DSM 8532, complete2,3-bisphosphoglycerate-independent phosphoglycerate mutase GpmI3e-83309
NC_003888:7561923:7579400757940075809351536Streptomyces coelicolor A3(2), complete genomephosphoglyceromutase1e-74280
NC_009485:1648896:166366116636611664338678Bradyrhizobium sp. BTAi1 chromosome, complete genomephosphoglycerate mutase7e-53208