Pre_GI: BLASTP Hits

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Query: NC_007384:3741708:3762019 Shigella sonnei Ss046, complete genome

Start: 3762019, End: 3762621, Length: 603

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:3107526310752631116444119Shigella flexneri 2002017 chromosome, complete genomeSerine protease pic precursor5e-114409
NC_011748:3360967:3360967336096733650854119Escherichia coli 55989, complete genomeSerine protease pic precursor (ShMu)5e-114409
CU928145:3360967:3360967336096733650854119Escherichia coli 55989 chromosome, complete genomeSerine protease pic precursor (ShMu)5e-114409
NC_004431:324000:3262093262093303244116Escherichia coli CFT073, complete genomePic serine protease precursor2e-104377
NC_010067:1655815:1669131166913116732854155Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-57219
NC_015761:1181186:1200390120039012045444155Salmonella bongori NCTC 12419, complete genomehemoglobin protease5e-56217
NC_004431:364000:3718773718773760074131Escherichia coli CFT073, complete genomeHaemoglobin protease1e-50199
NC_008253:334467:3640503640503681804131Escherichia coli 536, complete genomeSepA1e-50199
NC_011742:291237:2967172967173008474131Escherichia coli S88 chromosome, complete genomeVacuolating autotransporter toxin1e-50199
NC_013716:4306695:4356883435688343607313849Citrobacter rodentium ICC168, complete genomeputative adhesin autotransporter1e-49196
NC_013508:3188978:3206465320646532099893525Edwardsiella tarda EIB202, complete genometemperature sensitive hemagglutinin4e-45181
NC_009790:42112:4930649306534064101Escherichia coli E24377A plasmid pETEC_74, complete sequencesecreted serine peptidase EatA7e-45179
NC_010498:3988351:3993788399378839975973810Escherichia coli SMS-3-5, complete genomeouter membrane autotransporter1e-43176
CP002797:4411763:4425162442516244290943933Escherichia coli NA114, complete genomehypothetical protein2e-42172
NC_013353:3853082:3873591387359138776824092Escherichia coli O103:H2 str. 12009, complete genomesecreted autotransporter serine protease1e-38159
AP010958:3853082:3873591387359138776824092Escherichia coli O103:H2 str. 12009 DNA, complete genomesecreted autotransporter serine protease1e-38159
NC_014561:76931:8309083090849131824Pantoea vagans C9-1 plasmid pPag1, complete sequenceIgA-specific serine endopeptidase1e-23109
NC_013016:633313:6364416364416419395499Neisseria meningitidis alpha14 chromosome, complete genomeIgA-specific serine endopeptidase2e-23108
NC_017505:721395:7277097277097331925484Neisseria meningitidis alpha710 chromosome, complete genomeIgA1 protease2e-23108
NC_017517:749031:7552647552647605975334Neisseria meningitidis M01-240355 chromosome, complete genomeIgA-specific serine endopeptidase3e-23108
NC_017512:642229:6454606454606508955436Neisseria meningitidis WUE 2594, complete genomeIgA-specific serine endopeptidase (IgA protease)7e-23107
NC_003112:719490:7257087257087311555448Neisseria meningitidis MC58, complete genomeIgA-specific serine endopeptidase7e-23107
NC_017514:1520245:1527968152796815334185451Neisseria meningitidis M01-240149 chromosome, complete genomeIgA-specific serine endopeptidase8e-23106
NC_017515:1555500:1562134156213415674945361Neisseria meningitidis M04-240196 chromosome, complete genomeIgA-specific serine endopeptidase8e-23106
NC_003116:867943:8742588742588795795322Neisseria meningitidis Z2491, complete genomeIgA1 protease9e-23106
NC_017501:1633436:1642874164287416475324659Neisseria meningitidis 8013, complete genomeIgA-specific serine endopeptidase (IgA protease)1e-22106
NC_010120:662969:6669996669996723625364Neisseria meningitidis 053442, complete genomeIgA-specific serine endopeptidase2e-22105
NC_011745:3443371:3448048344804834498051758Escherichia coli ED1a chromosome, complete genome4e-2097.8
NC_004337:3590323:382972038297203830478759Shigella flexneri 2a str. 301, complete genomesimilar to serine protease7e-2097.1
NC_011601:2998326:3005494300549430094113918Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeserine protease8e-2096.7
NC_004431:3409389:3456362345636234602613900Escherichia coli CFT073, complete genomeAecreted auto transpoter toxin2e-1995.1
NC_011751:3453683:3479461347946134833603900Escherichia coli UMN026 chromosome, complete genomeSerine protease2e-1995.1
CU928145:4792703:4796367479636748002243858Escherichia coli 55989 chromosome, complete genomeSerine protease pet precursor (Plasmid-encoded toxin pet)4e-1994.4
NC_004741:3041294:3052614305261430564713858Shigella flexneri 2a str. 2457T, complete genomeserine protease4e-1994.4
NC_004337:3049118:3060438306043830642953858Shigella flexneri 2a str. 301, complete genomeserine protease4e-1994.4
NC_011748:4792703:4796367479636748002243858Escherichia coli 55989, complete genomeSerine protease pet precursor (Plasmid-encoded toxin pet)4e-1994.4
NC_017328:3088907:3100227310022731040843858Shigella flexneri 2002017 chromosome, complete genomeSerine protease4e-1994.4
NC_007384:3383983:3389961338996133938183858Shigella sonnei Ss046, complete genomeserine protease4e-1994.4
NC_016822:3420826:3430127343012734339843858Shigella sonnei 53G, complete genomeserine protease4e-1994.4
NC_013717:5726:2232822328262543927Citrobacter rodentium ICC168 plasmid pCROD1, complete sequenceputative serine protease autotransporter6e-1787.4
CU928159:30700:430184301843434417Escherichia coli str. 55989 plasmid 55989p, complete genomeSerine protease sepA precursor (fragment)2e-1685.5
CP002797:4411763:4418382441838244221463765Escherichia coli NA114, complete genomePer-activated serine protease autotransporter enterotoxin EspC6e-0650.8