Pre_GI: BLASTP Hits

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Query: NC_007384:307013:314849 Shigella sonnei Ss046, complete genome

Start: 314849, End: 314924, Length: 76

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:366905:36827136827136834676Salmonella enterica subsp. enterica serovar Typhimurium str. 798tRNA-Thr2e-0650.8
NC_020063:3690308:37416753741675374175076Enterobacteriaceae bacterium strain FGI 57, complete genometRNA-Thr2e-0650.8
NC_004431:364000:37022437022437029976Escherichia coli CFT073, complete genometRNA-Thr2e-0650.8
NC_012917:3684840:36964523696452369652776Pectobacterium carotovorum subsp. carotovorum PC1, complete genometRNA-Thr2e-0650.8
NC_006905:368942:37275737275737283276Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Thr2e-0650.8
NC_010498:301000:30664030664030671576Escherichia coli SMS-3-5, complete genometRNA-Thr2e-0650.8
NC_014500:3744705:37648183764818376489376Dickeya dadantii 3937 chromosome, complete genometRNA-Thr2e-0650.8
NC_014121:1101093:11078011107801110787676Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetRNA-Thr2e-0650.8
NC_013508:876431:88453988453988461476Edwardsiella tarda EIB202, complete genometRNA-Thr2e-0650.8
NC_004741:310382:31375331375331382876Shigella flexneri 2a str. 2457T, complete genometRNA-Thr2e-0650.8
NC_020260:3004500:30162373016237301631276Cronobacter sakazakii Sp291, complete genometRNA-Thr2e-0650.8
NC_004547:3866439:38801693880169388024476Erwinia carotovora subsp. atroseptica SCRI1043, complete genometRNA-Thr2e-0650.8
NC_009648:293052:31713131713131720676Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Thr2e-0650.8
NC_013421:3752619:37645023764502376457776Pectobacterium wasabiae WPP163, complete genometRNA-Thr2e-0650.8
NC_011083:374000:37676037676037683576Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tRNA-Thr2e-0650.8
NC_004337:309833:31120131120131127676Shigella flexneri 2a str. 301, complete genometRNA-Thr2e-0650.8
NC_020211:996497:10034401003440100351576Serratia marcescens WW4, complete genometRNA-Thr2e-0650.8
NC_016860:364981:36879736879736887276Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Thr2e-0650.8
NC_016857:366908:36827436827436834976Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tRNA-Thr2e-0650.8
NC_016856:365665:36948136948136955676Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Thr2e-0650.8
NC_016832:2581145:25998402599840259991576Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,tRNA-Thr2e-0650.8
NC_016514:891772:89970789970789978276Enterobacter cloacae EcWSU1 chromosome, complete genometRNA-Thr2e-0650.8
NC_014618:3700640:37123383712338371241376Enterobacter cloacae SCF1 chromosome, complete genometRNA-Thr2e-0650.8
NC_013361:313540:32137632137632145176Escherichia coli O26:H11 str. 11368 chromosome, complete genometRNA-Thr2e-0650.8
NC_012731:1088321:11021671102167110224276Klebsiella pneumoniae NTUH-K2044 chromosome, complete genometRNA-Thr2e-0650.8
NC_011745:291422:29699129699129706676Escherichia coli ED1a chromosome, complete genometRNA-Thr2e-0650.8
NC_011742:291237:29506429506429513976Escherichia coli S88 chromosome, complete genometRNA-Thr2e-0650.8
NC_011283:4438500:44451054445105444518076Klebsiella pneumoniae 342 chromosome, complete genometRNA-Thr2e-0650.8
NC_011205:371001:37236437236437243976Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tRNA-Thr2e-0650.8
NC_009800:289000:29174129174129181676Escherichia coli HS, complete genometRNA-Thr2e-0650.8
NC_004631:2584244:26029392602939260301476Salmonella enterica subsp. enterica serovar Typhi Ty2, completetRNA-Thr2e-0650.8
NC_021066:3028421:30384033038403303847876Raoultella ornithinolytica B6, complete genometRNA-Thr2e-0650.8