Pre_GI: BLASTP Hits

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Query: NC_007384:2933625:2936938 Shigella sonnei Ss046, complete genome

Start: 2936938, End: 2937309, Length: 372

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:3065426:306824230682423068613372Shigella sonnei 53G, complete genomeendonuclease6e-66248
NC_011601:1269500:128456112845611284926366Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomecrossover junction endodeoxyribonuclease1e-57221
NC_008258:2045000:206238520623852062750366Shigella flexneri 5 str. 8401, complete genomeputative endonuclease encoded by cryptic prophage2e-57220
NC_008258:1934479:193859419385941938953360Shigella flexneri 5 str. 8401, complete genomeputative endonuclease encoded by cryptic prophage1e-56218
NC_009801:1419324:143291514329151433274360Escherichia coli E24377A, complete genomecrossover junction endodeoxyribonuclease RusA homolog4e-56216
NC_016822:1304398:132180413218041322178375Shigella sonnei 53G, complete genomecrossover junction endodeoxyribonuclease5e-56215
NC_007384:1320287:133818613381861338560375Shigella sonnei Ss046, complete genomeputative crossover junction endodeoxyribonuclease5e-56215
NC_013361:1754346:175398417539841754349366Escherichia coli O26:H11 str. 11368 chromosome, complete genomeholliday junction resolvase4e-54209
NC_013364:1596278:161370916137091614083375Escherichia coli O111:H- str. 11128, complete genomeputative holliday junction resolvase6e-53205
NC_011748:1773642:178743817874381787815378Escherichia coli 55989, complete genomeputative crossover junction endodeoxyribonuclease rusA (Holliday junction nuclease rusA) (Holliday juction resolvase) (Gp67)1e-51201
CU928145:1773642:178743817874381787815378Escherichia coli 55989 chromosome, complete genomeputative crossover junction endodeoxyribonuclease rusA (Holliday junction nuclease rusA) (Holliday juction resolvase) (Gp67)1e-51201
CU928145:1408280:142231514223151422674360Escherichia coli 55989 chromosome, complete genomeputative crossover junction endodeoxyribonuclease rusA (Holliday junction nuclease rusA) (Holliday juction resolvase) (Gp67)3e-49193
NC_011748:1408280:142231514223151422674360Escherichia coli 55989, complete genomeputative crossover junction endodeoxyribonuclease rusA (Holliday junction nuclease rusA) (Holliday juction resolvase) (Gp67)3e-49193
NC_009800:289000:307182307182307544363Escherichia coli HS, complete genomecrossover junction endodeoxyribonuclease RusA3e-37153
NC_008258:269806:294823294823295185363Shigella flexneri 5 str. 8401, complete genomeputative crossover junction endodeoxyribonuclease9e-37152
NC_011601:1039500:105785110578511058213363Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomecrossover junction endodeoxyribonuclease2e-36151
NC_017328:303987:323731323731324093363Shigella flexneri 2002017 chromosome, complete genomeHoliday-junction resolvase1e-36151
NC_006511:2501500:251050425105042510866363Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein9e-37151
NC_011147:2496808:250604025060402506402363Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein9e-37151
NC_009778:1556222:157174015717401572102363Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-30129
NC_020260:1615135:163064816306481631010363Cronobacter sakazakii Sp291, complete genomehypothetical protein6e-30129
NC_007712:1219957:124588312458831246242360Sodalis glossinidius str. 'morsitans', complete genomeputative phage endonuclease2e-25114
NC_006905:368942:389632389632390027396Salmonella enterica subsp. enterica serovar Choleraesuis strRus3e-25114
NC_012125:1330066:135090713509071351302396Salmonella enterica subsp. enterica serovar Paratyphi C strainendodeoxyribonuclease RUS3e-25114
NC_013282:1200993:122183812218381222233396Cronobacter turicensis, complete genomeCrossover junction endodeoxyribonuclease rusA5e-24109
NC_013850:1887556:190854819085481908943396Klebsiella variicola At-22 chromosome, complete genomeCrossover junction endodeoxyribonuclease6e-24109
NC_015663:4522109:453090345309034531268366Enterobacter aerogenes KCTC 2190 chromosome, complete genomeendodeoxyribonuclease RUS8e-1992.4
NC_020063:2565605:257464325746432575005363Enterobacteriaceae bacterium strain FGI 57, complete genomeholliday junction resolvase2e-1891.3
NC_016514:2387312:239450623945062394868363Enterobacter cloacae EcWSU1 chromosome, complete genomeCrossover junction endodeoxyribonuclease rusA4e-1890.1
NC_015663:4767443:477570747757074776072366Enterobacter aerogenes KCTC 2190 chromosome, complete genomeendodeoxyribonuclease RUS8e-1889
NC_011751:1405381:142429214242921424654363Escherichia coli UMN026 chromosome, complete genomeendodeoxyribonuclease RUS2e-1787.8
NC_011751:643976:660259660259660621363Escherichia coli UMN026 chromosome, complete genomeendodeoxyribonuclease RUS2e-1787.8
AC_000091:558920:572594572594572956363Escherichia coli W3110 DNA, complete genomeendonuclease RUS2e-1787.8
NC_000913:558920:572594572594572956363Escherichia coli K12, complete genomeDLP12 prophage; endonuclease RUS2e-1787.8
NC_007946:1239278:125538512553851255747363Escherichia coli UTI89, complete genomeCrossover junction endodeoxyribonuclease RusA2e-1787.8
NC_008563:1175035:119277211927721193134363Escherichia coli APEC O1, complete genomeendonuclease RUS2e-1787.8
NC_004431:1401681:141885014188501419212363Escherichia coli CFT073, complete genomeCrossover junction endodeoxyribonuclease rusA2e-1787.8
NC_010473:498252:511926511926512288363Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; endonuclease RUS2e-1787.8
NC_011353:2957962:296545229654522965814363Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeendodeoxyribonuclease RUS2e-1787.8
NC_011742:1177946:119629411962941196656363Escherichia coli S88 chromosome, complete genomeendodeoxyribonuclease RUS2e-1787.8
NC_012759:461680:475354475354475716363Escherichia coli BW2952 chromosome, complete genomeendodeoxyribonuclease RUS2e-1787.8
NC_013008:2910567:292032329203232920685363Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeendodeoxyribonuclease RUS2e-1787.8
NC_013941:699286:712717712717713079363Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCrossover junction endodeoxyribonuclease rusA2e-1787.8
NC_011740:2769961:278010927801092780471363Escherichia fergusonii ATCC 35469, complete genomeendonuclease RUS; DLP12 prophage3e-1787.4
NC_012947:3231893:324005632400563240418363Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeendodeoxyribonuclease RUS2e-1787.4
NC_012967:531000:545261545261545623363Escherichia coli B str. REL606 chromosome, complete genomeendodeoxyribonuclease RUS2e-1787.4
NC_011742:4962008:496500949650094965398390Escherichia coli S88 chromosome, complete genomeCrossover junction endodeoxyribonuclease from phage origin1e-1685.1
NC_008563:5011997:501499850149985015387390Escherichia coli APEC O1, complete genomebacteriophage V crossover junction endodeoxyribonuclease1e-1685.1
NC_011742:2863316:286331628633162863705390Escherichia coli S88 chromosome, complete genomeCrossover junction endodeoxyribonuclease1e-1685.1
NC_008563:2946391:294600529460052946394390Escherichia coli APEC O1, complete genomebacteriophage V crossover junction endodeoxyribonuclease1e-1685.1
NC_011740:4520373:452247645224764522865390Escherichia fergusonii ATCC 35469, complete genomeCrossover junction endodeoxyribonuclease1e-1685.1
NC_007946:2931364:293097829309782931367390Escherichia coli UTI89, complete genomebacteriophage V crossover junction endodeoxyribonuclease1e-1685.1
NC_011750:5045927:506529650652965065685390Escherichia coli IAI39 chromosome, complete genomeCrossover junction endodeoxyribonuclease4e-1683.2
NC_013941:5317424:531982953198295320224396Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHolliday junction resolvase6e-1682.8
NC_004431:3040953:305585730558573056246390Escherichia coli CFT073, complete genomehypothetical protein1e-1582
NC_013282:1804909:182027018202701820659390Cronobacter turicensis, complete genomeCrossover junction endodeoxyribonuclease rusA1e-1581.6
NC_014838:218000:235514235514235879366Pantoea sp. At-9b plasmid pPAT9B01, complete sequenceendodeoxyribonuclease RusA2e-1581.6
NC_012731:2083650:210511521051152105513399Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomebacteriophage V crossover junction endodeoxyribonuclease2e-1580.9
NC_017047:1906000:191091619109161911290375Rahnella aquatilis HX2 chromosome, complete genomeendodeoxyribonuclease RusA3e-1477
NC_009778:959982:981951981951982334384Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-1476.6
NC_009053:553298:572506572506572874369Actinobacillus pleuropneumoniae L20, complete genomepredicted Endodeoxyribonuclease RusA2e-1271.2
NC_009655:1357486:137382713738271374192366Actinobacillus succinogenes 130Z chromosome, complete genomeendodeoxyribonuclease RusA5e-1166.6
NC_012751:899394:903962903962904237276Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeendonuclease RUS2e-0961.6
CU928145:824367:835595835595835822228Escherichia coli 55989 chromosome, complete genomefragment of endonuclease RUS; DLP12 prophage (partial)6e-0959.3
NC_011748:824367:835595835595835822228Escherichia coli 55989, complete genome6e-0959.3
NC_015850:1279372:129412212941221294538417Acidithiobacillus caldus SM-1 chromosome, complete genomeendodeoxyribonuclease RusA1e-0652
NC_013894:415776:432418432418432777360Thermocrinis albus DSM 14484 chromosome, complete genomeCrossover junction endodeoxyribonuclease3e-0650.8