Pre_GI: BLASTP Hits

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Query: NC_007384:278810:296108 Shigella sonnei Ss046, complete genome

Start: 296108, End: 296386, Length: 279

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012846:986877:988774988774989034261Bartonella grahamii as4aup, complete genome1e-1891.7
NC_015385:1875671:190920219092021909492291Treponema succinifaciens DSM 2489 chromosome, complete genomeaddiction module toxin, RelE/StbE family5e-1889.7
NC_012846:1708840:172516417251641725415252Bartonella grahamii as4aup, complete genome2e-1788.2
NC_014355:399938:410359410359410628270Candidatus Nitrospira defluvii, complete genomerelE toxin9e-1682.4
NC_002967:552000:558257558257558538282Treponema denticola ATCC 35405, complete genomehypothetical protein1e-1582
NC_017068:1852708:187315518731551873430276Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative addiction module toxin2e-1581.3
NC_013216:426877:430949430949431197249Desulfotomaculum acetoxidans DSM 771, complete genome7e-1579
NC_011830:3786173:379952037995203799792273Desulfitobacterium hafniense DCB-2, complete genomeaddiction module toxin, RelE/StbE family3e-1477
NC_015437:27325:733147331473592279Selenomonas sputigena ATCC 35185 chromosome, complete genomeaddiction module toxin, RelE/StbE family8e-1475.9
NC_015519:2526047:252604725260472526322276Tepidanaerobacter sp. Re1 chromosome, complete genomeRelE/StbE family addiction module toxin9e-1475.5
NC_014828:541874:557523557523557798276Ethanoligenens harbinense YUAN-3 chromosome, complete genomeaddiction module toxin, RelE/StbE family2e-1374.3
NC_013316:2033906:205562320556232055913291Clostridium difficile R20291, complete genomeaddiction module toxin, rele/stbe family3e-1373.9
NC_014355:399938:406481406481406750270Candidatus Nitrospira defluvii, complete genomerelE toxin6e-1372.8
NC_016630:434500:439306439306439584279Filifactor alocis ATCC 35896 chromosome, complete genometoxin-antitoxin system, toxin component, RelE family1e-1271.6
NC_013165:1294000:129938412993841299665282Slackia heliotrinireducens DSM 20476, complete genomeaddiction module toxin, RelE/StbE family2e-1271.2
NC_016945:324519:327985327985328254270Vibrio cholerae IEC224 chromosome II, complete sequenceplasmid stabilization system protein1e-0962
NC_011992:2279752:230373823037382304019282Acidovorax ebreus TPSY, complete genomeaddiction module toxin, RelE/StbE family1e-0962
NC_016446:49618:530835308353379297Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completeplasmid stabilization system protein1e-0962
NC_002506:324552:328018328018328314297Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completehypothetical protein1e-0962
NC_016513:1400899:142004314200431420309267Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeaddiction module antitoxin1e-0962
NC_013416:1091432:110934811093481109614267Aggregatibacter actinomycetemcomitans D11S-1, complete genomeaddiction module antitoxin/putative RelE toxin-like protein, plasmid stabilization system1e-0962
NC_011662:2402408:242444224244422424690249Thauera sp. MZ1T, complete genomeaddiction module toxin, RelE/StbE family1e-0961.6
NC_013721:533048:551842551842552117276Gardnerella vaginalis 409-05, complete genometoxin-antitoxin system, toxin component, RelE family1e-0858.5
NC_012846:1147000:116049611604961160777282Bartonella grahamii as4aup, complete genomeaddiction module toxin, RelE/StbE family2e-0858.2
NC_015850:2048251:211943021194302119585156Acidithiobacillus caldus SM-1 chromosome, complete genomeaddiction module antitoxin1e-0755.5
NC_016830:381049:382794382794382997204Pseudomonas fluorescens F113 chromosome, complete genomeYafQ toxin protein2e-0754.3
NC_009802:1977596:199350019935001993769270Campylobacter concisus 13826, complete genomeaddiction module toxin, RelE/StbE family3e-0753.9
NC_012560:1677798:169177216917721692050279Azotobacter vinelandii DJ, complete genomeplasmid stabilization system protein/addiction module toxin4e-0753.5
NC_021150:1677811:169178516917851692063279Azotobacter vinelandii CA6, complete genomeplasmid stabilization system protein/addiction module toxin4e-0753.5