Pre_GI: BLASTP Hits

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Query: NC_007384:278810:290490 Shigella sonnei Ss046, complete genome

Start: 290490, End: 290963, Length: 474

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:267758:289342289342289815474Shigella sonnei 53G, complete genomeC-lysozyme inhibitor2e-80297
NC_011751:256830:275058275058275531474Escherichia coli UMN026 chromosome, complete genomeC-lysozyme inhibitor3e-80296
NC_002695:261235:278411278411278884474Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-80296
NC_002655:261236:278412278412278885474Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-80296
NC_008563:258725:272820272820273293474Escherichia coli APEC O1, complete genomeinhibitor of vertebrate C-lysozyme2e-79293
NC_008253:257059:272167272167272640474Escherichia coli 536, complete genomeinhibitor of vertebrate lysozyme precursor2e-79293
NC_007946:258747:272842272842273315474Escherichia coli UTI89, complete genomeinhibitor of vertebrate lysozyme precursor2e-79293
NC_011742:258746:272841272841273314474Escherichia coli S88 chromosome, complete genomeC-lysozyme inhibitor2e-79293
NC_011745:258727:274740274740275213474Escherichia coli ED1a chromosome, complete genomeC-lysozyme inhibitor2e-79293
NC_015663:4129685:412968541296854130134450Enterobacter aerogenes KCTC 2190 chromosome, complete genomeC-lysozyme inhibitor3e-58223
NC_010634:3250810:325548732554873255996510Yersinia pseudotuberculosis PB1/+, complete genomeinhibitor of vertebrate lysozyme2e-0961.6
NC_004088:1510467:152508515250851525594510Yersinia pestis KIM, complete genomehypothetical protein2e-0961.6
NC_008150:2574794:257800125780012578510510Yersinia pestis Antiqua, complete genomehypothetical protein2e-0961.6
NC_005810:3021913:302512030251203025629510Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein2e-0961.6
NC_008149:1440371:145500514550051455514510Yersinia pestis Nepal516, complete genomehypothetical protein2e-0961.6
NC_006155:3333303:333800333380033338512510Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-0961.6
NC_009381:2491427:249463424946342495143510Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein2e-0961.6
NC_014029:3171627:318624531862453186754510Yersinia pestis Z176003 chromosome, complete genomehypothetical protein2e-0961.6
NC_017154:2876545:287967728796772880186510Yersinia pestis D106004 chromosome, complete genomehypothetical protein2e-0961.6
NC_017160:3094768:311121231112123111721510Yersinia pestis D182038 chromosome, complete genomehypothetical protein2e-0961.6
NC_017168:2535732:253891925389192539428510Yersinia pestis A1122 chromosome, complete genomehypothetical protein2e-0961.6
NC_009708:1403434:141662214166221417131510Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein2e-0961.6
NC_003143:3191246:319443331944333194897465Yersinia pestis CO92, complete genomehypothetical protein2e-0961.6