Pre_GI: BLASTP Hits

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Query: NC_007384:2251792:2259077 Shigella sonnei Ss046, complete genome

Start: 2259077, End: 2260111, Length: 1035

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:2341127:2348412234841223494311020Shigella sonnei 53G, complete genomeputative fimbrial-like adhesin protein StcD0648
NC_000913:2180855:2185402218540221864361035Escherichia coli K12, complete genomepredicted fimbrial-like adhesin protein0646
AC_000091:2185369:2190714219071421917481035Escherichia coli W3110 DNA, complete genomepredicted fimbrial-like adhesin protein0646
NC_010468:1694729:1706583170658317076171035Escherichia coli ATCC 8739, complete genomeputative type-1 fimbrial protein0646
NC_012759:2069326:2077885207788520789191035Escherichia coli BW2952 chromosome, complete genomeputative fimbrial-like adhesin protein0645
NC_009800:2225182:2229729222972922307631035Escherichia coli HS, complete genomehypothetical protein0643
CP002185:2347413:2355972235597223570061035Escherichia coli W, complete genomepredicted fimbrial-like adhesin protein0641
NC_011741:2239637:2246922224692222479561035Escherichia coli IAI1 chromosome, complete genomeputative exported fimbrial-like adhesin protein0640
CU928160:2239637:2246922224692222479561035Escherichia coli IAI1 chromosome, complete genomeputative exported fimbrial-like adhesin protein0640
NC_011745:2399313:2406598240659824076321035Escherichia coli ED1a chromosome, complete genomeputative exported fimbrial-like adhesin protein0637
NC_011750:955451:9678949678949689281035Escherichia coli IAI39 chromosome, complete genomeputative exported fimbrial-like adhesin protein0634
NC_008258:2190635:219542821954282196243816Shigella flexneri 5 str. 8401, complete genomeputative type-1 fimbrial protein2e-139495
NC_017328:2225418:223401822340182234833816Shigella flexneri 2002017 chromosome, complete genomeputative type-1 fimbrial protein1e-138492
NC_004337:2185282:219312821931282193943816Shigella flexneri 2a str. 301, complete genomeputative type-1 fimbrial protein1e-138492
NC_004741:2169877:217465821746582175467810Shigella flexneri 2a str. 2457T, complete genome6e-138490
NC_011740:2220251:2237217223721722382571041Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein, putative exported protein4e-67254
NC_002655:2925787:2933340293334029343741035Escherichia coli O157:H7 EDL933, complete genomeputative fimbrial protein4e-36152
NC_002695:2854629:2863109286310928641431035Escherichia coli O157:H7 str. Sakai, complete genomeputative type-1 fimbrial protein4e-36152
NC_011353:2852362:2859920285992028609541035Escherichia coli O157:H7 str. EC4115 chromosome, complete genometype-1 fimbrial protein4e-36152
NC_013008:2851342:2858901285890128599351035Escherichia coli O157:H7 str. TW14359 chromosome, complete genomefimbrial protein4e-36152
NC_020063:3690308:3699723369972337008411119Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein2e-0653.9