Pre_GI: BLASTP Hits

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Query: NC_007384:2251792:2258477 Shigella sonnei Ss046, complete genome

Start: 2258477, End: 2258995, Length: 519

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:2239637:224632222463222246840519Escherichia coli IAI1 chromosome, complete genomehypothetical protein7e-92335
CU928160:2239637:224632222463222246840519Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein7e-92335
NC_011750:955451:969010969010969528519Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-91334
NC_009800:2225182:222912922291292229647519Escherichia coli HS, complete genomehypothetical protein2e-91334
NC_011745:2399313:240599824059982406516519Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-90331
NC_004741:2169877:217383421738342174352519Shigella flexneri 2a str. 2457T, complete genome2e-90331
NC_002655:2925787:293274029327402933258519Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-85314
NC_016822:2341127:234799223479922348330339Shigella sonnei 53G, complete genomehypothetical protein4e-55213
NC_008258:2190635:219479021947902195128339Shigella flexneri 5 str. 8401, complete genomehypothetical protein4e-55213
NC_004337:2185282:219249021924902192828339Shigella flexneri 2a str. 301, complete genomehypothetical protein4e-55213
CP002185:2347413:235555223555522355890339Escherichia coli W, complete genomeconserved hypothetical protein1e-54212
AC_000091:2185369:219029421902942190632339Escherichia coli W3110 DNA, complete genomehypothetical protein1e-54212
NC_000913:2180855:218498221849822185320339Escherichia coli K12, complete genomehypothetical protein1e-54212
NC_010473:2267851:227599022759902276328339Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein1e-54212
NC_010468:1694729:170769917076991708037339Escherichia coli ATCC 8739, complete genomehypothetical protein1e-54212
NC_012759:2069326:207746520774652077803339Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-54212
NC_013008:2851342:285848128584812858819339Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-54211
NC_011353:2852362:285950028595002859838339Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-54211
NC_002695:2854629:286268928626892863027339Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-54211
NC_011740:2220251:223682122368212237165345Escherichia fergusonii ATCC 35469, complete genomehypothetical protein1e-48192
NC_009792:642881:654929654929655273345Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein5e-46183
NC_012731:3593000:360903436090343609378345Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein3e-33140
NC_009778:1070000:109263810926381093036399Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein5e-29127
NC_020260:1111130:113472711347271135038312Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-27122
NC_013971:2876733:288344128834412883881441Erwinia amylovora ATCC 49946 chromosome, complete genomelipoprotein3e-23107
NC_010694:2971170:297804629780462978489444Erwinia tasmaniensis, complete genomehypothetical protein8e-22103
NC_014306:4901390:490549249054924906013522Erwinia billingiae Eb661, complete genomehypothetical protein3e-1994.7
NC_012214:2805297:280954028095402809971432Erwinia pyrifoliae Ep1/96, complete genomePredicted integral membrane protein4e-0650.8