Pre_GI: BLASTP Hits

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Query: NC_007384:2007467:2026020 Shigella sonnei Ss046, complete genome

Start: 2026020, End: 2027273, Length: 1254

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013364:1596278:1602395160239516036481254Escherichia coli O111:H- str. 11128, complete genomevoltage-gated potassium channel protein Kch0797
NC_009801:1392696:1397878139787813991311254Escherichia coli E24377A, complete genomepotassium channel protein kch0797
NC_007606:1209132:1213393121339312146461254Shigella dysenteriae Sd197, complete genomeputative potassium channel protein0795
NC_010473:1384000:139698613969861397689704Escherichia coli str. K-12 substr. DH10B, complete genome5e-117421
NC_009484:429269:4487494487494499991251Acidiphilium cryptum JF-5 chromosome, complete genomevoltage-gated potassium channel6e-64245
NC_010465:1273000:1279778127977812809531176Yersinia pseudotuberculosis YPIII, complete genomeTrkA-N domain protein7e-59228
NC_010634:3368000:3379380337938033805551176Yersinia pseudotuberculosis PB1/+, complete genomeTrkA domain-containing protein7e-59228
NC_006155:3456488:3465723346572334668981176Yersinia pseudotuberculosis IP 32953, complete genomeputative potassium channel protein, VIC superfamily7e-59228
NC_009708:1284555:1291399129139912925741176Yersinia pseudotuberculosis IP 31758 chromosome, complete genomevoltage-gated potassium channel7e-59228
NC_008149:1317109:1325785132578513269601176Yersinia pestis Nepal516, complete genomepotassium channel protein1e-58227
NC_004088:1387276:1395886139588613970611176Yersinia pestis KIM, complete genomepotassium channel1e-58227
NC_003143:2992295:3000971300097130021461176Yersinia pestis CO92, complete genomeputative potassium channel protein1e-58227
NC_008150:2681327:2690003269000326911781176Yersinia pestis Antiqua, complete genomeputative potassium channel protein1e-58227
NC_005810:2739878:2748549274854927497241176Yersinia pestis biovar Microtus str. 91001, complete genomevoltage-gated potassium channel1e-58227
NC_010159:3779129:3785772378577237869471176Yersinia pestis Angola, complete genomepotassium channel protein Kch1e-58227
NC_009381:1783886:1794293179429317954681176Yersinia pestis Pestoides F chromosome, complete genomevoltage-gated potassium channel1e-58227
NC_014029:3047506:3056182305618230573571176Yersinia pestis Z176003 chromosome, complete genomeputative potassium channel protein1e-58227
NC_017154:2999841:3009076300907630102511176Yersinia pestis D106004 chromosome, complete genomeputative potassium channel protein1e-58227
NC_017160:2976683:2981156298115629823311176Yersinia pestis D182038 chromosome, complete genomeputative potassium channel protein1e-58227
NC_017168:2751027:2760262276026227614371176Yersinia pestis A1122 chromosome, complete genomevoltage-gated potassium channel1e-58227
NC_017265:3063016:3072251307225130734261176Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative potassium channel protein1e-58227
NC_002689:78297:1008111008111018391029Thermoplasma volcanium GSS1, complete genomeKef-type K+ transport system, predicted NAD-binding component2e-22107
NC_009662:837500:8607008607008622801581Nitratiruptor sp. SB155-2, complete genomepotassium channel protein1e-1997.8
NC_011296:801612:8023268023268033481023Thermodesulfovibrio yellowstonii DSM 11347, complete genomepotassium uptake protein, TrkA family2e-1894
NC_013171:1194500:1207194120719412082011008Anaerococcus prevotii DSM 20548, complete genomeTrkA-N domain protein2e-1894
NC_016616:2997348:2997348299734829983851038Dechlorosoma suillum PS chromosome, complete genomeK+ transport system, NAD-binding component2e-1687
NC_014935:711765:7131957131957147751581Nitratifractor saLSUginis DSM 16511 chromosome, complete genometrka-n domain protein2e-1480.5
NC_014122:205112:220070220070221065996Methanocaldococcus infernus ME chromosome, complete genomeTrkA-N domain protein3e-1480.1
NC_015320:1342105:137401513740151375001987Archaeoglobus veneficus SNP6 chromosome, complete genomeTrkA-N domain-containing protein1e-1378.2
NC_009616:1604276:1621305162130516223241020Thermosipho melanesiensis BI429 chromosome, complete genomeTrkA domain-containing protein2e-1377.4
NC_019978:1477724:1498498149849814995081011Halobacteroides halobius DSM 5150, complete genomeK+ transport system, NAD-binding component3e-1376.6
NC_007355:3979729:4001968400196840030111044Methanosarcina barkeri str. fusaro chromosome 1, complete sequencepotassium channel protein4e-1376.3
NC_015167:569569:5961235961235971361014Cellulophaga lytica DSM 7489 chromosome, complete genomeTrkA-N domain-containing protein4e-1273.2
NC_010003:605961:6098536098536108931041Petrotoga mobilis SJ95, complete genomeTrkA-N domain protein5e-1272.8
NC_014391:621062:6436766436766446891014Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeTrkA-N domain-containing protein2e-1170.9
NC_014815:841484:8928578928578938701014Micromonospora sp. L5 chromosome, complete genometrka-n domain protein3e-1170.1
NC_013849:1396051:139882413988241399351528Ferroglobus placidus DSM 10642 chromosome, complete genomehypothetical protein5e-1169.3
NC_012704:1747539:1751366175136617525081143Corynebacterium kroppenstedtii DSM 44385, complete genometransport protein of the voltage-gated ion channel superfamily7e-1168.9
NC_009932:39348:4051240512415701059Acaryochloris marina MBIC11017 plasmid pREB7, complete sequenceTrkA family potassium uptake protein , putative8e-1168.6
NC_014926:1108811:1111454111145411129501497Thermovibrio ammonificans HB-1 chromosome, complete genome5e-1066.2
NC_014972:1510914:1525955152595515276671713Desulfobulbus propionicus DSM 2032 chromosome, complete genomeTrkA-N domain-containing protein5e-1065.9
NC_014166:2217790:2230804223080422319341131Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeIon transport 2 domain-containing protein9e-1065.1
NC_013093:915248:9297489297489308271080Actinosynnema mirum DSM 43827, complete genomeTrkA-N domain protein1e-0861.6
NC_010730:180000:2013802013802029211542Sulfurihydrogenibium sp. YO3AOP1, complete genomeIon transport protein2e-0860.8
NC_007511:1300978:1306824130682413079841161Burkholderia sp. 383 chromosome 2, complete sequenceTrkA-like protein3e-0860.5
NC_007575:1663088:1681803168180316829391137Sulfurimonas denitrificans DSM 1251, complete genomehypothetical protein4e-0859.7
NC_008595:1413354:1413354141335414150991746Mycobacterium avium 104, complete genomeTrkA-N domain family protein5e-0859.3
NC_013791:875224:8952738952738962921020Bacillus pseudofirmus OF4 chromosome, complete genomepotassium channel protein2e-0757.4
NC_010546:1175979:119186711918671192652786Cyanothece sp. ATCC 51142 chromosome circular, complete sequenceion transport protein2e-0757.4
NC_013967:2103968:210396821039682104810843Haloferax volcanii DS2 chromosome, complete genomeIon channel family4e-0756.2
NC_015730:3853065:387904038790403879825786Roseobacter litoralis Och 149 chromosome, complete genomeputative ion channel3e-0653.5
NC_017372:902043:9033499033499044851137Helicobacter pylori India7 chromosome, complete genomeputative potassium channel protein4e-0652.8
NC_014256:636000:6502186502186513541137Helicobacter pylori B8 chromosome, complete genomeputative conserved potassium channel protein4e-0652.8
NC_010698:870312:8727788727788739141137Helicobacter pylori Shi470, complete genomeputative potassium channel protein4e-0652.8
NC_011757:1246000:127110512711051271854750Methylobacterium chloromethanicum CM4, complete genomeIon transport 2 domain protein1e-0551.6