Pre_GI: BLASTP Hits

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Query: NC_007384:1763375:1770045 Shigella sonnei Ss046, complete genome

Start: 1770045, End: 1770461, Length: 417

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010660:86445:9314693146943421197Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase2e-52203
NC_008258:1934479:1935527193552719367231197Shigella flexneri 5 str. 8401, complete genomeISSfl2 ORF8e-52201
NC_010658:1772994:1785651178565117868471197Shigella boydii CDC 3083-94, complete genometransposase2e-51201
NC_008253:3941938:3987475398747539886711197Escherichia coli 536, complete genomeputative transposase3e-51199
NC_007607:87000:1224321224321236281197Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceISSfl2 ORF5e-51199
NC_007434:1322500:1349622134962213509381317Burkholderia pseudomallei 1710b chromosome I, complete sequenceTransposase4e-45179
NC_008060:2913671:2927028292702829282901263Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencetransposase IS116/IS110/IS9027e-45178
NC_010804:2206000:2216716221671622179211206Burkholderia multivorans ATCC 17616 chromosome 1, completeISBmu10 transposase1e-43174
NC_010087:319063:3418413418413430461206Burkholderia multivorans ATCC 17616 chromosome 3, completetransposase IS116/IS110/IS902 family protein1e-43174
NC_010801:550270:5818125818125830171206Burkholderia multivorans ATCC 17616 chromosome 3, completeISBmu10 transposase1e-43174
NC_010084:1299387:1306852130685213080571206Burkholderia multivorans ATCC 17616 chromosome 1, completetransposase IS116/IS110/IS902 family protein1e-43174
NC_007952:3196085:3195026319502631962311206Burkholderia xenovorans LB400 chromosome 2, complete sequenceputative transposase5e-43172
NC_007951:1928906:194963619496361950214579Burkholderia xenovorans LB400 chromosome 1, complete sequence8e-43172
NC_015145:3657103:3677666367766636788651200Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometransposase8e-38155
NC_008537:12500:1657316573178381266Arthrobacter sp. FB24 plasmid 1, complete sequencetransposase, IS111A/IS1328/IS15331e-37154
NC_012803:1302261:1311276131127613125021227Micrococcus luteus NCTC 2665, complete genometransposase3e-34143
NC_014391:4617688:4619787461978746210101224Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS116/IS110/IS902 family protein2e-32137
NC_009142:2725000:2743012274301227442291218Saccharopolyspora erythraea NRRL 2338, complete genometransposase IS116/IS110/IS902 family protein5e-32136
NC_016111:1904859:1908978190897819102791302Streptomyces cattleya NRRL 8057, complete genomehypothetical protein7e-32135
NC_008271:119957:1199571199571211321176Rhodococcus sp. RHA1 plasmid pRHL3, complete sequenceprobable transposase4e-28123
NC_014218:1163513:1178727117872711799261200Arcanobacterium haemolyticum DSM 20595 chromosome, complete genometransposase IS116/IS110/IS902 family protein1e-27121
NC_009142:5647737:564935756493575649965609Saccharopolyspora erythraea NRRL 2338, complete genomeputative IS110 transposase/integrase1e-24111
NC_003888:8594500:8609130860913086103471218Streptomyces coelicolor A3(2), complete genomeprobable IS110 transposase1e-23108
NC_003888:7028165:7057809705780970590261218Streptomyces coelicolor A3(2), complete genomeIS110 transposase/integrase1e-23108
NC_013929:1584906:1597557159755715987591203Streptomyces scabiei 87.22 chromosome, complete genometransposase3e-23107
NC_013131:3473843:3476181347618134773801200Catenulispora acidiphila DSM 44928, complete genometransposase IS116/IS110/IS902 family protein8e-22102
NC_007164:622000:6289516289516301621212Corynebacterium jeikeium K411, complete genometransposase for IS3510d5e-22102
NC_018583:95388:985769857699028453Gordonia sp. KTR9 plasmid pGKT3, complete sequenceTransposase-like protein4e-1993.2
NC_008543:2696377:270755627075562707891336Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetransposase IS116/IS110/IS902 family protein1e-1891.7
NC_008061:2548849:255909725590972559432336Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetransposase IS116/IS110/IS9022e-1891.3
NC_016822:1839739:184809118480911848417327Shigella sonnei 53G, complete genomeISSfl2 ORF3e-1787.4
NC_016787:1782951:179752217975221797899378Corynebacterium diphtheriae HC03 chromosome, complete genometransposase-like protein5e-1786.3
NC_015673:2206881:2212642221264222138561215Corynebacterium resistens DSM 45100 chromosome, complete genometransposase for insertion sequence element4e-1580.1
NC_016802:1815098:183281618328161833145330Corynebacterium diphtheriae HC02 chromosome, complete genometransposase-like protein5e-1579.7
NC_016788:1785287:179959917995991799928330Corynebacterium diphtheriae HC04 chromosome, complete genometransposase-like protein3e-1477
NC_016790:1758000:177197217719721772301330Corynebacterium diphtheriae VA01 chromosome, complete genometransposase-like protein3e-1477
NC_016799:731849:748118748118748507390Corynebacterium diphtheriae 31A chromosome, complete genometransposase-like protein4e-1476.6
NC_012522:7871173:789676878967687897541774Rhodococcus opacus B4, complete genomeputative transposase4e-1373.2
NC_008703:31500:4552345523467281206Mycobacterium sp. KMS plasmid pMKMS01, complete sequencetransposase IS116/IS110/IS902 family protein1e-1271.6
NC_014811:166389:1674631674631686681206Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequencetransposase1e-1271.6
NC_008703:31500:3294732947341521206Mycobacterium sp. KMS plasmid pMKMS01, complete sequencetransposase IS116/IS110/IS902 family protein1e-1271.6
NC_008537:12500:2948329483306761194Arthrobacter sp. FB24 plasmid 1, complete sequencetransposase IS116/IS110/IS902 family protein5e-1269.7
NC_016785:161498:181021181021181488468Corynebacterium diphtheriae CDCE 8392 chromosome, complete genometransposase-like protein5e-1269.7
NC_007164:1839154:1859120185912018603281209Corynebacterium jeikeium K411, complete genometransposase for IS3512c7e-1269.3
NC_010612:4654936:4671921467192146731261206Mycobacterium marinum M, complete genometransposase1e-1168.6
NC_015673:525638:5298365298365310441209Corynebacterium resistens DSM 45100 chromosome, complete genometransposase for insertion sequence element1e-1168.6
NC_002944:2373873:2388971238897123901911221Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein1e-1168.2
NC_002944:1881405:1882374188237418835941221Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein1e-1168.2
NC_015312:61752:7224072240734421203Pseudonocardia dioxanivorans CB1190 chromosome, complete genometransposase IS116/IS110/IS902 family protein2e-1167.8
NC_016787:733685:7510667510667522741209Corynebacterium diphtheriae HC03 chromosome, complete genometransposase-like protein3e-1167
NC_016799:731849:7454017454017466091209Corynebacterium diphtheriae 31A chromosome, complete genometransposase-like protein3e-1167
NC_002944:4163490:4183576418357641847841209Mycobacterium avium subsp. paratuberculosis K-10, complete genomeIS1110 transposase2e-1064.3
NC_015145:2693749:2712406271240627136081203Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genometransposase8e-1062.4
NC_008253:3122148:312997331299733130362390Escherichia coli 536, complete genomehypothetical protein8e-1062.4
NC_012586:425615:4426694426694438471179Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceputative transposase for insertion sequence NGRIS-14a4e-0960.1
NC_016111:2952338:2959354295935429605501197Streptomyces cattleya NRRL 8057, complete genomehypothetical protein6e-0959.3
NC_006087:2326143:2327614232761423288161203Leifsonia xyli subsp. xyli str. CTCB07, complete genometransposase, undefined7e-0959.3
NC_016789:199503:219727219727219939213Corynebacterium diphtheriae PW8 chromosome, complete genometransposase-like protein1e-0858.9
NC_019673:2051363:2139699213969921409161218Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein4e-0857
NC_014666:1844882:1861075186107518622711197Frankia sp. EuI1c chromosome, complete genometransposase IS116/IS110/IS902 family protein6e-0856.2
NC_014666:1601972:1613788161378816149841197Frankia sp. EuI1c chromosome, complete genometransposase IS116/IS110/IS902 family protein6e-0856.2
NC_009254:442360:451923451923452051129Burkholderia vietnamiensis G4 chromosome 3, complete sequence1e-0755.1
NC_016582:10159486:102085631020856310209084522Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transposase3e-0753.9
NC_016800:694750:714651714651714890240Corynebacterium diphtheriae BH8 chromosome, complete genometransposase-like protein4e-0753.5
NC_016788:655175:676817676817677056240Corynebacterium diphtheriae HC04 chromosome, complete genometransposase-like protein4e-0753.5
NC_016582:10326938:1033242710332427103336231197Streptomyces bingchenggensis BCW-1 chromosome, complete genomeIS116/IS110/IS902 family transposase4e-0753.5
NC_016789:224697:230091230091230393303Corynebacterium diphtheriae PW8 chromosome, complete genometransposase-like protein5e-0753.1
NC_014158:233733:2820262820262832401215Tsukamurella paurometabola DSM 20162 chromosome, complete genometransposase IS116/IS110/IS902 family protein2e-0651.2
NC_013929:3722867:3749514374951437506591146Streptomyces scabiei 87.22 chromosome, complete genometransposase2e-0651.2
NC_013441:2788806:2820958282095828221811224Gordonia bronchialis DSM 43247, complete genometransposase IS111A/IS1328/IS15335e-0649.7