Pre_GI: BLASTP Hits

Some Help

Query: NC_007384:16500:28347 Shigella sonnei Ss046, complete genome

Start: 28347, End: 28565, Length: 219

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:4081484:408727540872754087493219Escherichia coli KO11FL chromosome, complete genomehypothetical protein4e-35146
AP010958:12660:244082440824626219Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein4e-35146
NC_011748:11394:231422314223360219Escherichia coli 55989, complete genomehypothetical protein4e-35146
CU928145:11394:231422314223360219Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein4e-35146
CU928160:11381:231302313023348219Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein4e-35146
CP002516:4081484:408727540872754087493219Escherichia coli KO11, complete genomehypothetical protein4e-35146
NC_009800:12162:244772447724695219Escherichia coli HS, complete genomehypothetical protein4e-35146
NC_009801:11921:243962439624614219Escherichia coli E24377A, complete genomehypothetical protein4e-35146
NC_011415:11381:231282312823346219Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-35146
NC_011741:11381:231302313023348219Escherichia coli IAI1 chromosome, complete genomehypothetical protein4e-35146
NC_013353:12660:244082440824626219Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-35146
NC_013361:11382:231392313923357219Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein4e-35146
NC_016822:15401:275672756727785219Shigella sonnei 53G, complete genomehypothetical protein4e-35146
NC_011751:12000:255392553925757219Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-34144
NC_012947:3753375:375825137582513758469219Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-34144
NC_012967:12161:252532525325471219Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-34144
NC_013941:12000:255682556825792225Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-32136
NC_013008:11938:255872558725811225Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-32136
NC_002655:12000:255872558725811225Escherichia coli O157:H7 EDL933, complete genomehypothetical protein4e-32136
NC_002695:12000:255862558625810225Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-32136
NC_013364:11382:231232312323353231Escherichia coli O111:H- str. 11128, complete genomehypothetical protein7e-30129
NC_010102:25893:470634706347209147Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-0752.8