Pre_GI: BLASTP Hits

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Query: NC_007384:16500:25267 Shigella sonnei Ss046, complete genome

Start: 25267, End: 25635, Length: 369

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009800:12162:2062920629217741146Escherichia coli HS, complete genome3e-67253
NC_013361:11382:1928219282204271146Escherichia coli O26:H11 str. 11368 chromosome, complete genome4e-67252
NC_013353:12660:2055920559217041146Escherichia coli O103:H2 str. 12009, complete genome4e-67252
NC_011415:11381:1927919279204241146Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-67252
AP010958:12660:2055920559217041146Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-67252
NC_013364:11382:1926619266204111146Escherichia coli O111:H- str. 11128, complete genome4e-67252
NC_012947:3753375:3761761376176137630921332Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete8e-67251
NC_010468:3970995:3980312398031239816641353Escherichia coli ATCC 8739, complete genome8e-67251
NC_012967:12161:2063020630217751146Escherichia coli B str. REL606 chromosome, complete genomeputative usher protein2e-66250
NC_016822:15401:244872448724855369Shigella sonnei 53G, complete genomehypothetical protein3e-66249
NC_016902:4081484:4090008409000840913421335Escherichia coli KO11FL chromosome, complete genome1e-64244
CP002516:4081484:4090008409000840913421335Escherichia coli KO11, complete genome1e-64244
CP002185:11921:2056020560217051146Escherichia coli W, complete genomeconserved hypothetical protein2e-64244
NC_002655:12000:1929919299217492451Escherichia coli O157:H7 EDL933, complete genomeputative usher protein2e-63240
NC_002695:12000:1929819298217482451Escherichia coli O157:H7 str. Sakai, complete genomeputative outer membrane usher protein precursor2e-63240
NC_013941:12000:1928019280217302451Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeusher protein2e-63240
NC_011353:12000:1984819848217491902Escherichia coli O157:H7 str. EC4115 chromosome, complete genome3e-63239
NC_011750:12047:2309123091255412451Escherichia coli IAI39 chromosome, complete genomeputative fimbrial biogenesis outer membrane usher protein6e-63238
NC_011748:11394:1929419294204631170Escherichia coli 55989, complete genome7e-63238
CU928145:11394:1929419294204631170Escherichia coli 55989 chromosome, complete genomefragment of putative fimbrial biogenesis outer membrane usher protein (partial)7e-63238
NC_011751:12000:1923819238216882451Escherichia coli UMN026 chromosome, complete genomeputative fimbrial biogenesis outer membrane usher protein2e-62236
NC_011741:11381:201752017520426252Escherichia coli IAI1 chromosome, complete genomehypothetical protein1e-41167
CU928160:11381:201752017520426252Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein1e-41167
NC_002655:2925787:2934385293438529368652481Escherichia coli O157:H7 EDL933, complete genomeputative outer membrane protein3e-40163
CP002185:2347413:2357022235702223595022481Escherichia coli W, complete genomepredicted outer membrane usher protein3e-40163
NC_002695:2854629:2864154286415428666342481Escherichia coli O157:H7 str. Sakai, complete genomeputative outer membrane protein3e-40163
NC_011353:2852362:2860965286096528634452481Escherichia coli O157:H7 str. EC4115 chromosome, complete genomefimbrial usher protein3e-40163
NC_013008:2851342:2859946285994628624262481Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeouter membrane protein3e-40163
CU928160:2239637:2247970224797022504502481Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative outer membrane protein3e-40163
NC_011741:2239637:2247970224797022504502481Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-40163
NC_011750:955451:9653989653989678782481Escherichia coli IAI39 chromosome, complete genomehypothetical protein8e-40162
NC_007384:2251792:2260127226012722633843258Shigella sonnei Ss046, complete genome1e-39161
NC_010468:1694729:1704087170408717065672481Escherichia coli ATCC 8739, complete genomefimbrial biogenesis outer membrane usher protein1e-39161
AC_000091:2185369:2191764219176421942442481Escherichia coli W3110 DNA, complete genomepredicted outer membrane protein1e-39161
NC_010473:2267851:2277460227746022799402481Escherichia coli str. K-12 substr. DH10B, complete genomepredicted outer membrane protein1e-39161
NC_000913:2180855:2186452218645221889322481Escherichia coli K12, complete genomepredicted outer membrane protein1e-39161
NC_012759:2069326:2078935207893520814152481Escherichia coli BW2952 chromosome, complete genomeputative outer membrane protein1e-39161
NC_016822:2341127:2349447234944723514502004Shigella sonnei 53G, complete genomefimbrial outer membrane usher protein1e-39161
NC_009800:2225182:2230779223077922332592481Escherichia coli HS, complete genomefimbrial usher protein1e-39161
NC_004337:2185282:2193959219395921964392481Shigella flexneri 2a str. 301, complete genomeputative outer membrane protein2e-39160
NC_004741:2169877:2175483217548321779632481Shigella flexneri 2a str. 2457T, complete genomeputative outer membrane protein2e-39160
NC_008258:2190635:2196259219625921987392481Shigella flexneri 5 str. 8401, complete genomeputative outer membrane protein2e-39160
NC_017328:2225418:2234849223484922373112463Shigella flexneri 2002017 chromosome, complete genomeputative outer membrane protein2e-39160
NC_011745:2399313:2407648240764824101282481Escherichia coli ED1a chromosome, complete genomehypothetical protein5e-39159
NC_011740:2220251:2238261223826122407442484Escherichia fergusonii ATCC 35469, complete genomeputative Paral outer membrane protein, putative exported protein2e-38157
NC_009801:11921:2056020560215671008Escherichia coli E24377A, complete genome7e-38155
NC_009792:642881:6513766513766538622487Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-37153
NC_011283:819970:8305328305328330122481Klebsiella pneumoniae 342 chromosome, complete genomefimbrial usher protein8e-36149
NC_009792:2688747:2702550270255027045201971Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-1580.5
NC_009832:4564752:4608190460819046107002511Serratia proteamaculans 568, complete genomefimbrial biogenesis outer membrane usher protein1e-1272
NC_016818:546805:5533595533595559562598Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeP pilus assembly protein, porin PapC5e-1063.2
NC_016514:891772:9217949217949243162523Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YehB2e-0961.2
NC_010552:196457:2032742032742057812508Burkholderia ambifaria MC40-6 chromosome 2, complete sequencefimbrial biogenesis outer membrane usher protein9e-0958.9
NC_011283:819970:8390228390228415082487Klebsiella pneumoniae 342 chromosome, complete genomeouter membrane usher protein MrkC1e-0858.5
NC_008253:3941938:3961785396178539643192535Escherichia coli 536, complete genomeputative F17-like fimbrial usher2e-0857.8
NC_007946:4779745:4803028480302848056132586Escherichia coli UTI89, complete genomeputative F17-like fimbrial usher2e-0857.8
NC_016818:3816000:3822432382243238251402709Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeP pilus assembly protein, porin PapC3e-0857.4
NC_010002:6590081:6607614660761466107363123Delftia acidovorans SPH-1, complete genomefimbrial biogenesis outer membrane usher protein1e-0755.1
NC_015563:733704:7420327420327451243093Delftia sp. Cs1-4 chromosome, complete genomefimbrial biogenesis outer membrane usher protein1e-0755.1
NC_006511:4465495:4474080447408044765242445Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCouter membrane fimbrial usher protein2e-0754.7
NC_011147:4460726:4469310446931044717542445Salmonella enterica subsp. enterica serovar Paratyphi A strouter membrane fimbrial usher protein2e-0754.7
NC_003198:4676536:4698333469833347008492517Salmonella enterica subsp. enterica serovar Typhi str. CT18,outer membrane fimbrial usher protein2e-0754.7
NC_004631:4661000:4681221468122146837732553Salmonella enterica subsp. enterica serovar Typhi Ty2, completeouter membrane fimbrial usher protein2e-0754.7
NC_016832:4649432:4657898465789846603962499Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Outer membrane usher protein sefC2e-0754.7
NC_016818:749673:7563767563767589672592Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeP pilus assembly protein, porin PapC2e-0754.7
NC_011205:4718239:4728963472896347314072445Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853outer membrane fimbrial usher protein2e-0754.7
NC_011294:4560902:4571626457162645740702445Salmonella enterica subsp. enterica serovar Enteritidis strouter membrane fimbrial usher protein2e-0754.7
NC_007492:3462929:3484548348454834870342487Pseudomonas fluorescens PfO-1, complete genomeFimbrial biogenesis outer membrane usher protein2e-0754.3
NC_009648:293052:2967712967712993262556Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative fimbriae; usher6e-0753.1
NC_011740:165363:1748301748301774272598Escherichia fergusonii ATCC 35469, complete genomeouter membrane usher protein5e-0753.1
NC_020063:3690308:3704176370417637066382463Enterobacteriaceae bacterium strain FGI 57, complete genomeP pilus assembly protein, porin PapC6e-0752.8
NC_012721:137046:1510211510211538372817Burkholderia glumae BGR1 chromosome 2, complete genomeP pilus assembly protein porin PapC6e-0752.8
NC_011745:149594:1588281588281614162589Escherichia coli ED1a chromosome, complete genomeputative outer membrane usher protein7e-0752.8
NC_008253:149693:1582781582781608662589Escherichia coli 536, complete genomeouter membrane usher protein HtrE precursor7e-0752.8
NC_004431:153907:1633761633761659642589Escherichia coli CFT073, complete genomeOuter membrane usher protein htrE precursor8e-0752.4
NC_011601:149428:1586551586551612432589Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeouter membrane usher protein8e-0752.4
NC_007946:149733:1588751588751614632589Escherichia coli UTI89, complete genomeouter membrane usher protein HtrE precursor8e-0752.4
NC_011742:149732:1588741588741614622589Escherichia coli S88 chromosome, complete genomeouter membrane usher protein8e-0752.4
NC_008563:149709:1588511588511614392589Escherichia coli APEC O1, complete genomeouter membrane usher protein HtrE precursor8e-0752.4
NC_010468:3835259:3844331384433138469312601Escherichia coli ATCC 8739, complete genomefimbrial biogenesis outer membrane usher protein1e-0652
NC_017047:3869350:3878273387827338809092637Rahnella aquatilis HX2 chromosome, complete genomeputative fimbrial outer membrane usher protein1e-0652
NC_015061:3801927:3810882381088238135182637Rahnella sp. Y9602 chromosome, complete genomefimbrial biogenesis outer membrane usher protein1e-0652
NC_015733:1680500:1682742168274216840161275Pseudomonas putida S16 chromosome, complete genomefimbrial biogenesis outer membrane usher protein1e-0652
NC_011750:156799:1644081644081669032496Escherichia coli IAI39 chromosome, complete genomeputative outer membrane usher protein2e-0651.6
NC_013716:357928:3994123994124020002589Citrobacter rodentium ICC168, complete genomeputative fimbrial usher protein2e-0651.6
CP002516:3949061:3955128395512839577282601Escherichia coli KO11, complete genomefimbrial biogenesis outer membrane usher protein2e-0651.2
CP002185:146389:1541751541751567752601Escherichia coli W, complete genomepredicted outer membrane usher protein2e-0651.2
NC_013364:143492:1543511543511569512601Escherichia coli O111:H- str. 11128, complete genomeputative outer membrane porin protein2e-0651.2
CU928145:143755:1529201529201555202601Escherichia coli 55989 chromosome, complete genomeouter membrane usher protein2e-0651.2
NC_009792:4693152:4702269470226947048122544Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0651.2
NC_011748:143755:1529201529201555202601Escherichia coli 55989, complete genomeputative outer membrane usher protein2e-0651.2
NC_013361:145461:1555491555491581492601Escherichia coli O26:H11 str. 11368 chromosome, complete genomeouter membrane usher protein2e-0651.2
NC_011415:146397:1541831541831567832601Escherichia coli SE11 chromosome, complete genomeputative outer membrane usher protein2e-0651.2
NC_010498:153755:1632301632301658302601Escherichia coli SMS-3-5, complete genomeouter membrane usher protein HtrE2e-0651.2
NC_009801:143426:1542851542851568852601Escherichia coli E24377A, complete genomeouter membrane usher protein2e-0651.2
NC_016902:3949061:3955128395512839577282601Escherichia coli KO11FL chromosome, complete genomefimbrial biogenesis outer membrane usher protein2e-0651.2
NC_008321:2649781:2671234267123426736932460Shewanella sp. MR-4, complete genomefimbrial biogenesis outer membrane usher protein2e-0651.2
NC_012759:144576:1528281528281554252598Escherichia coli BW2952 chromosome, complete genomeputative outer membrane usher protein2e-0651.2
NC_000913:144577:1528291528291554262598Escherichia coli K12, complete genomepredicted outer membrane usher protein2e-0651.2
AC_000091:144577:1528291528291554262598Escherichia coli W3110 DNA, complete genomepredicted outer membrane usher protein2e-0651.2
NC_010473:118681:1269331269331295302598Escherichia coli str. K-12 substr. DH10B, complete genomepredicted outer membrane usher protein2e-0651.2
NC_013353:143358:1542171542171568172601Escherichia coli O103:H2 str. 12009, complete genomeouter membrane porin protein2e-0651.2
NC_011741:145276:1530621530621556622601Escherichia coli IAI1 chromosome, complete genomeputative outer membrane usher protein2e-0651.2
CU928160:145276:1530621530621556622601Escherichia coli IAI1 chromosome, complete genomeouter membrane usher protein2e-0651.2
AP010958:143358:1542171542171568172601Escherichia coli O103:H2 str. 12009 DNA, complete genomeprobable outer membrane porin protein2e-0651.2
NC_012967:145582:1556701556701582702601Escherichia coli B str. REL606 chromosome, complete genomeputative outer membrane usher protein2e-0651.2
NC_012947:3619384:3625451362545136280512601Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeouter membrane usher protein2e-0651.2
NC_010002:6590081:6613099661309966159902892Delftia acidovorans SPH-1, complete genomefimbrial biogenesis outer membrane usher protein3e-0650.8
NC_009656:4527457:4534994453499445375132520Pseudomonas aeruginosa PA7 chromosome, complete genomeusher CupC34e-0650.1
NC_013716:1918664:1933519193351919359662448Citrobacter rodentium ICC168, complete genomeputative fimbrial usher protein8e-0649.3