Pre_GI: BLASTP Hits

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Query: NC_007384:1355060:1376240 Shigella sonnei Ss046, complete genome

Start: 1376240, End: 1377418, Length: 1179

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1339058:1359088135908813602661179Shigella sonnei 53G, complete genomephosphoribosylglycinamide formyltransferase 20770
NC_008258:1873805:1895374189537418965521179Shigella flexneri 5 str. 8401, complete genomephosphoribosylglycinamide formyltransferase 20761
NC_010159:1668795:1687096168709616882771182Yersinia pestis Angola, complete genomephosphoribosylglycinamide formyltransferase 29e-177619
NC_013421:2306000:2309722230972223109001179Pectobacterium wasabiae WPP163, complete genomephosphoribosylglycinamide formyltransferase 26e-173607
NC_012912:2553391:2568157256815725693381182Dickeya zeae Ech1591, complete genomephosphoribosylglycinamide formyltransferase 22e-172605
NC_010278:1235934:1247008124700812481891182Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,phosphoribosylglycinamide formyltransferase 26e-142504
NC_013959:1428381:1446411144641114476161206Sideroxydans lithotrophicus ES-1 chromosome, complete genomephosphoribosylglycinamide formyltransferase 22e-123442
NC_006958:2911711:2916315291631529175411227Corynebacterium glutamicum ATCC 13032, complete genome5'-phosphoribosylglycinamide transformylase7e-121434
NC_003450:2938404:2943010294301029442361227Corynebacterium glutamicum ATCC 13032, complete genomephosphoribosylglycinamide formyltransferase 27e-121434
NC_009257:5615:1753217532186921161Francisella tularensis subsp. tularensis WY96-3418 chromosome,phosphoribosylglycinamide formyltransferase 26e-119427
NC_013407:203539:2223252223252234941170Methanocaldococcus vulcanius M7, complete genomephosphoribosylglycinamide formyltransferase 21e-118426
NC_016937:1850382:1853983185398318551431161Francisella tularensis subsp. tularensis TI0902 chromosome,phosphoribosylglycinamide formyltransferase 22e-118426
NC_008245:1845525:1853913185391318550731161Francisella tularensis subsp. tularensis FSC 198, complete genomephosphoribosylglycinamide formyltransferase 22e-118426
NC_009749:77583:8541685416865761161Francisella tularensis subsp. holarctica FTA, complete genomephosphoribosylglycinamide formyltransferase 23e-118425
NC_008369:82515:8535885358865181161Francisella tularensis subsp. holarctica OSU18, complete genomephosphoribosylglycinamide formyltransferase3e-118425
NC_016047:345491:3577353577353588891155Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completephosphoribosylglycinamide formyltransferase 23e-115415
NC_014639:3850000:3870849387084938720031155Bacillus atrophaeus 1942 chromosome, complete genomephosphoribosylglycinamide formyltransferase 22e-113409
CP002207:3850000:3870849387084938720031155Bacillus atrophaeus 1942, complete genomephosphoribosylglycinamide formyltransferase 22e-113409
NC_014222:1677610:1699438169943817006251188Methanococcus voltae A3 chromosome, complete genomephosphoribosylglycinamide formyltransferase 23e-112405
NC_017192:159047:1738391738391750081170Arcobacter sp. L, complete genomephosphoribosylglycinamide formyltransferase1e-103376
NC_000868:1607552:1608905160890516101941290Pyrococcus abyssi GE5, complete genome5'-phosphoribosylglycinamide transformylase1e-96353
NC_011059:2478075:2505511250551125066921182Prosthecochloris aestuarii DSM 271, complete genomephosphoribosylglycinamide formyltransferase 27e-95347
NC_014537:542515:5540315540315552301200Vulcanisaeta distributa DSM 14429 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein8e-95347
NC_014471:217279:2296232296232308371215Ignisphaera aggregans DSM 17230 chromosome, complete genomePhosphoribosylaminoimidazole carboxylase3e-89329
NC_012590:2501593:2502664250266425040101347Corynebacterium aurimucosum ATCC 700975, complete genomephosphoribosylglycinamide formyltransferase1e-87323
NC_007181:163640:1764281764281776241197Sulfolobus acidocaldarius DSM 639, complete genome5'-phosphoribosylglycinamide transformylase1e-85317
NC_009464:1531847:1548593154859315498731281Uncultured methanogenic archaeon RC-I, complete genomephosphoribosylglycinamide formyltransferase2e-76286
NC_017317:2149794:2152844215284421538991056Corynebacterium ulcerans 809 chromosome, complete genomephosphoribosylglycinamide formyltransferase 25e-47188
NC_015683:2249949:2253000225300022540551056Corynebacterium ulcerans BR-AD22 chromosome, complete genomephosphoribosylglycinamide formyltransferase 25e-47188
NC_010278:1235934:124368212436821244068387Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,phosphoribosylglycinamide formyltransferase 22e-32140
NC_004193:783958:7875257875257886581134Oceanobacillus iheyensis HTE831, complete genomephosphoribosylaminoimidazole carboxylase II4e-27122
NC_009633:947695:9520859520859532601176Alkaliphilus metalliredigens QYMF chromosome, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit7e-27121
NC_006396:1253873:1274647127464712757921146Haloarcula marismortui ATCC 43049 chromosome I, complete sequencephosphoribosylaminoimidazole carboxylase ATP binding subunit1e-26120
NC_018704:433402:4360854360854372061122Amphibacillus xylanus NBRC 15112, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit4e-25115
NC_009718:1183816:1191599119159911927771179Fervidobacterium nodosum Rt17-B1, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit1e-23111
NC_010556:462500:4749684749684760711104Exiguobacterium sibiricum 255-15, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit2e-23110
NC_015690:8019859:8025458802545880266541197Paenibacillus mucilaginosus KNP414 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit4e-23109
NC_015391:2488450:2506125250612525072611137Carnobacterium sp. 17-4 chromosome, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit4e-23109
NC_014829:443500:4477714477714488981128Bacillus cellulosilyticus DSM 2522 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit9e-23108
NC_016786:2059564:206256520625652063461897Corynebacterium diphtheriae HC01 chromosome, complete genomephosphoribosylglycinamide formyltransferase2e-22107
NC_016782:2058967:206196820619682062864897Corynebacterium diphtheriae 241 chromosome, complete genomephosphoribosylglycinamide formyltransferase2e-22107
NC_016790:2027332:202733220273322028228897Corynebacterium diphtheriae VA01 chromosome, complete genomephosphoribosylglycinamide formyltransferase4e-22105
NC_002935:2103677:210667821066782107574897Corynebacterium diphtheriae NCTC 13129, complete genomePutative phosphoribosylglycinamide formyltransferase3e-21103
NC_016788:2115428:211542821154282116324897Corynebacterium diphtheriae HC04 chromosome, complete genomephosphoribosylglycinamide formyltransferase6e-21102
NC_015732:2762424:2773962277396227751611200Spirochaeta caldaria DSM 7334 chromosome, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit6e-21102
NC_017208:256163:3078223078223089731152Bacillus thuringiensis serovar chinensis CT-43 chromosome, completephosphoribosylaminoimidazole5e-21102
NC_010718:464405:4781224781224792851164Natranaerobius thermophilus JW/NM-WN-LF, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit6e-2098.6
NC_007626:2354260:2397158239715823982671110Magnetospirillum magneticum AMB-1, complete genomePhosphoribosylaminoimidazole carboxylase7e-2098.6
NC_014498:99015:1103031103031113941092Streptococcus pneumoniae 670-6B chromosome, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit6e-1995.5
NC_011567:238249:2525402525402536881149Anoxybacillus flavithermus WK1, complete genomePhosphoribosylaminoimidazole carboxylase (NCAIR synthetase)9e-1994.7
NC_010380:124655:1359431359431370341092Streptococcus pneumoniae Hungary19A-6, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit1e-1894.4
NC_014171:261952:3182513182513193151065Bacillus thuringiensis BMB171 chromosome, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit2e-1894
NC_016023:1725294:1738061173806117392211161Bacillus coagulans 36D1 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit2e-1893.6
NC_007963:3225306:3228734322873432298281095Chromohalobacter salexigens DSM 3043, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit4e-1892.8
NC_012673:2152639:2171335217133521724291095Exiguobacterium sp. AT1b, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit5e-1892.4
NC_020164:1784223:1796774179677417979011128Staphylococcus warneri SG1, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit6e-1892
NC_014633:265086:2788602788602799871128Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence5-(carboxyamino)imidazole ribonucleotide synthase6e-1892
NC_018665:422451:4347274347274358301104Exiguobacterium antarcticum B7 chromosome, complete genomeN5-carboxyaminoimidazole ribonucleotide synthase8e-1891.7
NC_018720:1510084:1513178151317815143441167Bifidobacterium asteroides PRL2011 chromosome, complete genomepurK Phosphoribosylaminoimidazole carboxylase NCAIR mutase subunit1e-1790.9
NC_009439:101174:1177031177031187881086Pseudomonas mendocina ymp, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit2e-1790.9
NC_007705:3429493:3451745345174534528901146Xanthomonas oryzae pv. oryzae MAFF 311018, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit3e-1790.1
NC_003919:3113343:3136762313676231379071146Xanthomonas axonopodis pv. citri str. 306, complete genomephosphoribosylaminoimidazole carboxylase3e-1789.7
NC_012926:30351:4168541685427641080Streptococcus suis BM407 chromosome, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit1e-1688.2
NC_012924:29353:4168741687427661080Streptococcus suis SC84, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit1e-1688.2
NC_012925:29353:4168741687427661080Streptococcus suis P1/7, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit1e-1688.2
NC_009667:1203861:1229969122996912310691101Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencephosphoribosylaminoimidazole carboxylase ATPase subunit2e-1687
NC_008022:35983:4917849178502871110Streptococcus pyogenes MGAS10270, complete genomePhosphoribosylaminoimidazole carboxylase NCAIR mutase subunit2e-1687
NC_014958:3346500:3364144336414433652561113Deinococcus maricopensis DSM 21211 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit2e-1687
NC_002488:2546495:2546495254649525476761182Xylella fastidiosa 9a5c, complete genomephosphoribosylaminoimidazole carboxylase2e-1686.7
NC_004368:53307:5989459894609821089Streptococcus agalactiae NEM316, complete genomephosphoribosylaminoimidazole carboxylase5e-1685.9
NC_009443:29349:4168341683427561074Streptococcus suis 98HAH33, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit7e-1685.5
NC_015222:1492500:1493104149310414942371134Nitrosomonas sp. AL212 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit7e-1685.1
NC_008023:35663:4878448784498931110Streptococcus pyogenes MGAS2096, complete genomePhosphoribosylaminoimidazole carboxylase NCAIR mutase subunit7e-1685.1
NC_008021:35661:4880948809499181110Streptococcus pyogenes MGAS9429, complete genomephosphoribosylaminoimidazole carboxylase NCAIR mutase subunit7e-1685.1
NC_012913:772641:7944467944467955341089Aggregatibacter aphrophilus NJ8700, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit8e-1685.1
NC_007296:35661:4878248782498911110Streptococcus pyogenes MGAS6180, complete genomephosphoribosylaminoimidazole carboxylase8e-1685.1
NC_019907:920797:9446179446179456871071Liberibacter crescens BT-1 chromosome, complete genomePhosphoribosylaminoimidazole carboxylase ATPase subunit1e-1584.3
NC_008024:35948:4906949069502021134Streptococcus pyogenes MGAS10750, complete genomePhosphoribosylaminoimidazole carboxylase NCAIR mutase subunit2e-1584
NC_003485:35971:4909449094502031110Streptococcus pyogenes MGAS8232, complete genomephosphoribosylaminoimidazole carboxylase2e-1584
NC_008148:258292:2599842599842611501167Rubrobacter xylanophilus DSM 9941, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit3e-1583.6
NC_007168:1923723:1938251193825119393871137Staphylococcus haemolyticus JCSC1435, complete genomephosphoribosylaminoimidazole carboxylase carbon dioxide-fixation chain PurK3e-1583.6
NC_006513:38818:5678256782579421161Azoarcus sp. EbN1, complete genomephosphoribosylaminoimidazole carboxylase3e-1583.2
NC_013131:971937:9747079747079758431137Catenulispora acidiphila DSM 44928, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit9e-1581.6
NC_012985:1:4021640216412801065Candidatus Liberibacter asiaticus str. psy62, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit1e-1481.3
NC_004461:746284:7521587521587532851128Staphylococcus epidermidis ATCC 12228, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit1e-1480.9
NC_002976:638799:6446746446746458011128Staphylococcus epidermidis RP62A, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit2e-1480.5
NC_007508:3183631:3217825321782532189701146Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomephosphoribosylaminoimidazole carboxylase2e-1480.5
NC_009092:1441813:1446672144667214477691098Shewanella loihica PV-4, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit7e-1478.6
NC_008783:177161:2095162095162106671152Bartonella bacilliformis KC583, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit7e-1478.6
NC_017271:2935643:2993647299364729947891143Xanthomonas campestris pv. raphani 756C chromosome, completephosphoribosylaminoimidazole carboxylase ATPase subunit8e-1478.6
NC_015518:761380:8222908222908233811092Acidianus hospitalis W1 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit1e-1377.8
NC_010688:1908012:1908012190801219091541143Xanthomonas campestris pv. campestris, complete genomePhosphoribosylaminoimidazole carboxylase ATPase subunit1e-1377.8
NC_019815:761480:7733967733967745891194Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei5-(carboxyamino)imidazole ribonucleotide synthase1e-1377.8
NC_007086:1936505:1936505193650519376471143Xanthomonas campestris pv. campestris str. 8004, complete genomephosphoribosylaminoimidazole carboxylase1e-1377.8
NC_012526:300126:3241183241183252511134Deinococcus deserti VCD115, complete genomeputative Phosphoribosylaminoimidazole carboxylase ATPase subunit, (AIR carboxylase), (AIRC)2e-1377.4
NC_010465:3431500:3450659345065934517231065Yersinia pseudotuberculosis YPIII, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit9e-1375.1
NC_020299:127480:1431981431981443851188Candidatus Kinetoplastibacterium oncopeltii TCC290E, complete5-(carboxyamino)imidazole ribonucleotide synthase3e-1273.2
NC_009832:1280938:1279874127987412809411068Serratia proteamaculans 568, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit4e-1272.8
NC_015276:855150:8551508551508562171068Marinomonas mediterranea MMB-1 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit2e-1170.9
NC_011999:728353:7404097404097415271119Macrococcus caseolyticus JCSC5402, complete genomehypothetical protein2e-1170.9
NC_009338:5052000:5056044505604450573061263Mycobacterium gilvum PYR-GCK chromosome, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit2e-1170.5
NC_007929:1397989:1405425140542514065641140Lactobacillus salivarius subsp. salivarius UCC118, complete genomePhosphoribosylaminoimidazole carboxylase NCAIR mutase subunit3e-1170.1
NC_007712:1182518:1182518118251811835881071Sodalis glossinidius str. 'morsitans', complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit3e-1170.1
NC_014932:1314881:1331083133108313321981116Bartonella clarridgeiae 73, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit (AIR carboxylase) (AIRC)5e-1168.9
NC_013124:1544821:1545903154590315469941092Acidimicrobium ferrooxidans DSM 10331, complete genomePhosphoribosylaminoimidazole carboxylase5e-1168.9
NC_020260:2725201:2749892274989227509591068Cronobacter sakazakii Sp291, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit6e-1168.9
NC_014655:1038352:1043555104355510446821128Leadbetterella byssophila DSM 17132 chromosome, complete genome5-(carboxyamino)imidazole ribonucleotide synthase2e-1067
NC_015151:1872280:1897645189764518987691125Vulcanisaeta moutnovskia 768-28 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit4e-1066.2
NC_014541:2325780:2329312232931223304001089Ferrimonas balearica DSM 9799 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit8e-1065.1
NC_017513:997716:1009024100902410101601137Neisseria meningitidis G2136 chromosome, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit1e-0964.3
NC_014910:4316706:4319220431922043203891170Alicycliphilus denitrificans BC chromosome, complete genomephosphoribosylaminoimidazole carboxylase, atpase subunit2e-0963.9
NC_016816:3373950:3392889339288933939531065Pantoea ananatis LMG 5342, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit2e-0963.9
NC_016516:1799521:1799521179952118006931173Propionibacterium acnes TypeIA2 P.acn33 chromosome, completephosphoribosylaminoimidazole carboxylase ATPase subunit2e-0963.9
NC_015312:5579078:5599431559943156006361206Pseudonocardia dioxanivorans CB1190 chromosome, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit1e-0861.6
NC_012214:2805297:2828161282816128292281068Erwinia pyrifoliae Ep1/96, complete genomePhosphoribosylaminoimidazole carboxylase ATPase subunit2e-0860.8
NC_014814:4235477:4235477423547742366401164Mycobacterium sp. Spyr1 chromosome, complete genomephosphoribosylaminoimidazole carboxylase2e-0860.5
NC_014306:1286248:1285181128518112862511071Erwinia billingiae Eb661, complete genomePhosphoribosylaminoimidazole carboxylase ATPase subunit2e-0757.4
NC_005071:704882:7258347258347270331200Prochlorococcus marinus str. MIT 9313, complete genomephosphoribosylaminoimidazole carboxylase8e-0755.1
NC_015663:2807574:2808761280876128098281068Enterobacter aerogenes KCTC 2190 chromosome, complete genomephosphoribosylaminoimidazole carboxylase ATPase subunit9e-0755.1
NC_007335:117572:1219141219141230591146Prochlorococcus marinus str. NATL2A, complete genomephosphoribosylaminoimidazole carboxylase, ATPase subunit6e-0652.4