Pre_GI: BLASTP Hits

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Query: NC_007384:1086025:1108871 Shigella sonnei Ss046, complete genome

Start: 1108871, End: 1109605, Length: 735

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008800:2127918:212835421283542129046693Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative isochorismatase5e-104377
NC_015224:2061951:206385820638582064646789Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative isochorismatase2e-103374
NC_015276:1531159:153224815322481532994747Marinomonas mediterranea MMB-1 chromosome, complete genomepyrimidine utilization protein B3e-92338
NC_014562:1935088:195049819504981951184687Pantoea vagans C9-1 chromosome, complete genomeUncharacterized isochorismatase family protein6e-25114
NC_015675:2247960:224796022479602248628669Mesorhizobium opportunistum WSM2075 chromosome, complete genomeisochorismatase hydrolase2e-23109
NC_016885:809000:814982814982815587606Pyrobaculum oguniense TE7 chromosome, complete genomeAmidases related to nicotinamidase3e-22105
NC_012914:5618000:564655656465565647239684Paenibacillus sp. JDR-2, complete genomeisochorismatase hydrolase3e-22105
NC_007005:3414579:343049934304993431137639Pseudomonas syringae pv. syringae B728a, complete genomeIsochorismatase hydrolase2e-21103
NC_015320:1159613:116892511689251169581657Archaeoglobus veneficus SNP6 chromosome, complete genomeisochorismatase hydrolase3e-21102
NC_013131:7437831:744095674409567441681726Catenulispora acidiphila DSM 44928, complete genomeisochorismatase hydrolase5e-21101
NC_010407:3132683:315012531501253150856732Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative isochorismatase hydrolase4e-2098.2
NC_011961:528837:538092538092538706615Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequenceisochorismatase hydrolase1e-1996.7
NC_008701:391216:400802400802401407606Pyrobaculum islandicum DSM 4184, complete genomeisochorismatase hydrolase2e-1996.3
NC_013595:5221330:524233452423345242945612Streptosporangium roseum DSM 43021, complete genomehypothetical protein2e-1995.9
NC_014363:1396912:141891314189131419503591Olsenella uli DSM 7084 chromosome, complete genomeisochorismatase hydrolase1e-1790.1
NC_013939:1417750:142337214233721423887516Deferribacter desulfuricans SSM1, complete genomeisochorismatase hydrolase5e-1787.8
NC_010723:3499291:350750535075053508071567Clostridium botulinum E3 str. Alaska E43, complete genomeisochorismatase family protein3e-1685.5
NC_008212:61567:803368033680917582Haloquadratum walsbyi DSM 16790, complete genomeprobable isochorismatase; probable nicotinamidase; probable N-carbamoylsarcosine amidase5e-1581.3
NC_009439:4913767:493538449353844936079696Pseudomonas mendocina ymp, complete genomeisochorismatase hydrolase1e-1480.5
NC_013849:1034472:105592510559251056461537Ferroglobus placidus DSM 10642 chromosome, complete genomeisochorismatase hydrolase8e-1477.4
NC_016626:1825845:185396218539621854588627Burkholderia sp. YI23 plasmid byi_1p, complete sequenceamidase1e-1376.6
NC_002689:770326:787296787296787823528Thermoplasma volcanium GSS1, complete genomeAmidase (nicotinamidase-related)4e-1375.5
NC_015953:4793484:479348447934844794041558Streptomyces sp. SirexAA-E chromosome, complete genomeisochorismatase hydrolase4e-1272
NC_010511:2163570:216295021629502163573624Methylobacterium sp. 4-46 chromosome, complete genomeisochorismatase hydrolase8e-1270.9
NC_009663:946285:952888952888953454567Sulfurovum sp. NBC37-1, complete genomeisochorismatase hydrolase1e-1170.5
NC_015565:1163148:117081611708161171382567Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeisochorismatase hydrolase1e-1170.1
NC_013165:2440883:245411624541162454709594Slackia heliotrinireducens DSM 20476, complete genomenicotinamidase-like amidase4e-1168.6
NC_005877:665092:690138690138690668531Picrophilus torridus DSM 9790, complete genomeisochorismatase5e-1168.2
NC_010515:1124298:114309711430971143801705Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceisochorismatase hydrolase1e-1066.6
NC_016114:2612465:263283526328352633386552Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeisochorismatase hydrolase5e-1064.7
NC_016048:1694631:170541717054171706214798Oscillibacter valericigenes Sjm18-20, complete genomeputative hydrolase6e-1064.7
NC_009922:411434:417831417831418433603Alkaliphilus oremlandii OhILAs, complete genomeisochorismatase hydrolase8e-1064.3
AP010958:2134556:214002321400232140589567Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted hydrolase1e-0963.5
NC_013353:2134556:214002321400232140589567Escherichia coli O103:H2 str. 12009, complete genomehydrolase1e-0963.5
NC_014830:3438504:349372234937223494315594Intrasporangium calvum DSM 43043 chromosome, complete genomeisochorismatase hydrolase2e-0962.4
NC_008601:1151653:115894311589431159515573Francisella tularensis subsp. novicida U112, complete genomeisochorismatase family protein3e-0962
NC_014976:2231984:223723722372372237782546Bacillus subtilis BSn5 chromosome, complete genomeputative isochorismatase2e-0859.7
UCMB5137:1396603:139795713979571398505549Bacillus atrophaeus UCMB-5137YaaI2e-0859.7
NC_014840:205723:263173263173263763591Pantoea sp. At-9b plasmid pPAT9B03, complete sequenceisochorismatase hydrolase2e-0859.3
NC_007802:1240989:125184112518411252473633Jannaschia sp. CCS1, complete genomeisochorismatase hydrolase3e-0858.9
NC_013850:3340882:335239633523963352986591Klebsiella variicola At-22 chromosome, complete genomeisochorismatase hydrolase3e-0858.9
NC_015320:743983:743983743983744516534Archaeoglobus veneficus SNP6 chromosome, complete genomeisochorismatase hydrolase3e-0858.9
NC_011666:1923776:192487819248781925447570Methylocella silvestris BL2, complete genomeisochorismatase hydrolase6e-0857.8
NC_003106:2496232:251360625136062514166561Sulfolobus tokodaii str. 7, complete genomehypothetical protein7e-0857.8
NC_003909:2798622:2815395281539528164741080Bacillus cereus ATCC 10987, complete genomeacetyltransferase, GNAT family8e-0857.4
NC_016779:2693790:271063027106302711160531Bacillus cereus F837/76 chromosome, complete genomeisochorismatase2e-0756.2
NC_008600:2792584:280927028092702809800531Bacillus thuringiensis str. Al Hakam, complete genomeisochorismatase2e-0756.2
NC_011001:2085986:214806921480692148680612Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative isochorismatase2e-0756.2
NC_011655:171639:190634190634191164531Bacillus cereus AH187 plasmid pAH187_270, complete sequenceisochorismatase family protein3e-0755.8
NC_014172:278260:281490281490282020531Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequenceisochorismatase family protein3e-0755.8
NC_016792:226917:245912245912246442531Bacillus cereus NC7401 plasmid pNCcld, complete sequenceisochorismatase3e-0755.8
NC_017208:1:237722377224311540Bacillus thuringiensis serovar chinensis CT-43 chromosome, completepyrazinamidase3e-0755.8
NC_011973:70764:919029190292393492Bacillus cereus Q1 plasmid pBc239, complete sequenceIsochorismatase4e-0755.5
NC_014335:2718000:273618127361812736711531Bacillus cereus biovar anthracis str. CI chromosome, completeisochorismatase5e-0754.7
NC_016845:2729654:274155527415552742064510Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative isochorismatase hydrolase6e-0754.7
NC_010681:1234500:123975212397521240399648Burkholderia phytofirmans PsJN chromosome 1, complete sequenceisochorismatase hydrolase6e-0754.7
NC_015953:3860467:386213338621333862780648Streptomyces sp. SirexAA-E chromosome, complete genomeisochorismatase hydrolase6e-0754.7
NC_015138:3927411:394269839426983943273576Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeisochorismatase hydrolase8e-0754.3
NC_003295:2787371:280077928007792801369591Ralstonia solanacearum GMI1000, complete genomehypothetical protein8e-0754.3
NC_008148:1711679:171707017170701717699630Rubrobacter xylanophilus DSM 9941, complete genomeisochorismatase hydrolase8e-0754.3
NC_009648:1956070:196579219657921966301510Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative isochorismatase hydrolase7e-0754.3
NC_017208:2942554:296110529611052961635531Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeisochorismatase9e-0753.9
NC_010943:2422838:243933924393392439770432Stenotrophomonas maltophilia K279a, complete genomeputative amidase2e-0653.1
NC_014171:1:239942399424533540Bacillus thuringiensis BMB171 chromosome, complete genomepyrazinamidase3e-0652.4
NC_002939:579087:598373598373598921549Geobacter sulfurreducens PCA, complete genomeisochorismatase family protein3e-0652
NC_008596:4196194:420720642072064207916711Mycobacterium smegmatis str. MC2 155, complete genomehydrolase, isochorismatase family protein4e-0651.6