Pre_GI: BLASTP Hits

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Query: NC_007384:1086025:1107697 Shigella sonnei Ss046, complete genome

Start: 1107697, End: 1108859, Length: 1163

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:3956465:3974605397460539764161812Shigella sonnei Ss046, complete genome2e-134479
NC_010468:1775000:1792029179202917936171589Escherichia coli ATCC 8739, complete genome7e-109394
NC_007613:3470314:347560334756033475815213Shigella boydii Sb227, complete genomeputative IS1 encoded protein5e-1995.9
NC_017328:385552:3942543942543966772424Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-1894
NC_017328:2090679:209265220926522092927276Shigella flexneri 2002017 chromosome, complete genomeputative IS1 encoded protein2e-1894
NC_008258:2045000:204571820457182045993276Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein2e-1894
NC_004337:3590323:369261536926153693283669Shigella flexneri 2a str. 301, complete genomeIS150 ORF1(ORF A)2e-1893.6
NC_008258:3550500:357198435719843572226243Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein4e-1892.8
NC_010658:4494103:450182545018254502505681Shigella boydii CDC 3083-94, complete genomehypothetical protein6e-1892.4
NC_010658:2529033:252961125296112530024414Shigella boydii CDC 3083-94, complete genometransposase5e-1892.4
NC_008258:3224721:324186332418633242042180Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein9e-1891.7
NC_008258:4345400:436031743603174360583267Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein1e-1791.3
NC_008258:1784637:179112117911211791309189Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein1e-1790.9
NC_008258:1750964:176193117619311762167237Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein2e-1790.9
NC_007613:4156841:417569641756964175926231Shigella boydii Sb227, complete genomeputative IS1 encoded protein2e-1790.5
NC_004337:2035945:2050214205021420512481035Shigella flexneri 2a str. 301, complete genomeIS600 ORF22e-1790.5
NC_010658:1193225:120564212056421205896255Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein3e-1790.1
NC_017328:3655876:366205036620503662259210Shigella flexneri 2002017 chromosome, complete genomeIS150 ORF13e-1790.1
NC_008258:3581583:358741335874133587664252Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein3e-1790.1
NC_010658:1193225:121427612142761214500225Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein4e-1789.7
NC_007613:2699500:270599027059902706172183Shigella boydii Sb227, complete genomeputative IS1 encoded protein3e-1789.7
NC_008258:3995553:399956839995683999786219Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein3e-1789.7
NC_008258:1750964:175751217575121757739228Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein3e-1789.7
NC_007613:4217557:424498542449854245218234Shigella boydii Sb227, complete genomeputative IS1 encoded protein3e-1789.7
NC_010658:3622610:362924336292433629449207Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein5e-1789.4
NC_004337:3590323:360836036083603608683324Shigella flexneri 2a str. 301, complete genomeputative IS1 encoded protein5e-1789.4
NC_004337:4374500:439250143925014392824324Shigella flexneri 2a str. 301, complete genomeputative IS1 encoded protein5e-1789.4
NC_017328:4417000:443621344362134436536324Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF25e-1789.4
NC_008258:4345400:436211743621174362419303Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein5e-1789.4
NC_010660:175200:179672179672179947276Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencehypothetical protein4e-1789.4
NC_008258:1750964:175453017545301754709180Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein4e-1789.4
NC_008258:269806:284251284251284493243Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein4e-1789.4
NC_010658:3014371:302971830297183029966249Shigella boydii CDC 3083-94, complete genometransposase4e-1789.4
NC_008258:1784637:179439417943941794627234Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein4e-1789.4
NC_017328:1835108:184761318476131847846234Shigella flexneri 2002017 chromosome, complete genomeputative IS1 encoded protein4e-1789.4
NC_008258:2190635:219995521999552200188234Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein6e-1789
NC_004337:3590323:361094436109443611270327Shigella flexneri 2a str. 301, complete genomeputative IS1 encoded protein5e-1789
NC_010658:4494103:449905944990594499292234Shigella boydii CDC 3083-94, complete genometransposase6e-1788.6
NC_004851:157675:178876178876179178303Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceputative IS1 encoded protein7e-1788.6
NC_010658:3014371:301893630189363019244309Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein9e-1788.2
NC_010658:4257310:426604242660424266227186Shigella boydii CDC 3083-94, complete genometransposase1e-1687.8
NC_010658:4257310:427454442745444274732189Shigella boydii CDC 3083-94, complete genomeputative IS1 encoded protein1e-1687.4
NC_004337:3590323:381860038186003819571972Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-1687.4
NC_008258:2905413:291300729130072913213207Shigella flexneri 5 str. 8401, complete genomeputative IS1 encoded protein2e-1687.4
NC_010660:175200:191466191466191591126Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence2e-1584
NC_020260:882307:911776911776911997222Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-1480.9
NC_007613:1038000:104126210412621041429168Shigella boydii Sb227, complete genomeputative IS1 encoded protein2e-1377.4
NC_007613:3470314:347899834789983479168171Shigella boydii Sb227, complete genomeputative IS1 encoded protein2e-1377
NC_007613:761234:763110763110763292183Shigella boydii Sb227, complete genomeputative IS1 encoded protein3e-1376.6
NC_007613:1038000:104694910469491047122174Shigella boydii Sb227, complete genomeputative IS1 encoded protein4e-1376.3
NC_007613:4119771:413590741359074136077171Shigella boydii Sb227, complete genomeputative IS1 encoded protein5e-1375.9
NC_007613:1038000:105726810572681057438171Shigella boydii Sb227, complete genomeputative IS1 encoded protein5e-1375.9
NC_007613:4403070:440815544081554408331177Shigella boydii Sb227, complete genomeputative IS1-encoded protein5e-1375.9
NC_010658:1772994:177621317762131776326114Shigella boydii CDC 3083-94, complete genome5e-1375.9
NC_007613:4119771:412460941246094124776168Shigella boydii Sb227, complete genomeputative IS1 encoded protein5e-1375.9
NC_007613:2981829:298999829899982990288291Shigella boydii Sb227, complete genomeputative IS1 encoded protein1e-1274.7
NC_010658:4257310:426468142646814264794114Shigella boydii CDC 3083-94, complete genome1e-1274.3
NC_007613:4217557:423946642394664239642177Shigella boydii Sb227, complete genomeputative IS1 encoded protein2e-1273.9
NC_015224:2061951:206342220634222063808387Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein2e-1170.5
NC_008800:2127918:212791821279182128307390Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-1169.3
NC_017328:3088907:314376031437603144023264Shigella flexneri 2002017 chromosome, complete genomeputative IS1 encoded protein7e-1168.6
NC_008258:3581583:359822535982253598854630Shigella flexneri 5 str. 8401, complete genomeIS150 ORF1(ORF A)1e-1068.2
NC_007613:4217557:424181142418114242452642Shigella boydii Sb227, complete genomehypothetical protein2e-1067.4
NC_017328:3625000:364631336463133646516204Shigella flexneri 2002017 chromosome, complete genomeIS150 ORF12e-1067.4
NC_017328:4417000:443213344321334432360228Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF26e-1065.5
NC_017328:4417000:442183744218374422040204Shigella flexneri 2002017 chromosome, complete genomeputative integrase encoded by prophage CP-933K1e-0964.7
NC_017328:3794105:379472237947223794865144Shigella flexneri 2002017 chromosome, complete genomeputative integrase encoded by prophage CP-933K3e-0963.2
NC_017328:3655876:365972336597233660127405Shigella flexneri 2002017 chromosome, complete genomeputative alpha-mannosidase3e-0963.2
NC_017328:3794105:381084038108403811019180Shigella flexneri 2002017 chromosome, complete genomeputative integrase encoded by prophage CP-933K3e-0963.2
NC_017328:2225418:223949922394992239660162Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF24e-0962.8
NC_017328:3655876:367282036728203672960141Shigella flexneri 2002017 chromosome, complete genomeIS600 ORF25e-0962.4
NC_015276:1531159:153304715330471533430384Marinomonas mediterranea MMB-1 chromosome, complete genomepyrimidine utilization protein C7e-0962