Pre_GI: BLASTP Hits

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Query: NC_007384:1086025:1106289 Shigella sonnei Ss046, complete genome

Start: 1106289, End: 1106879, Length: 591

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015224:2061951:206195120619512062541591Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein5e-74276
NC_007952:1293024:131785313178531318437585Burkholderia xenovorans LB400 chromosome 2, complete sequenceNitroreductase family protein2e-66251
NC_016002:3077648:308138330813833081973591Pseudogulbenkiania sp. NH8B, complete genomenitroreductase3e-62237
NC_016147:513819:517841517841518431591Pseudoxanthomonas spadix BD-a59 chromosome, complete genomemalonic semialdehyde reductase5e-62236
NC_010943:493002:493002493002493592591Stenotrophomonas maltophilia K279a, complete genomeputative nitroreductase family protein1e-60232
NC_014394:2228470:223404122340412234637597Gallionella capsiferriformans ES-2 chromosome, complete genomenitroreductase1e-55215
NC_012982:2730000:273955927395592740152594Hirschia baltica ATCC 49814, complete genomenitroreductase3e-52204
NC_010170:1551923:156876315687631569353591Bordetella petrii, complete genomeputative enzyme1e-51202
NC_009465:766893:791950791950792531582Candidatus Vesicomyosocius okutanii HA, complete genomehypothetical protein3e-50197
NC_014391:1812500:181327118132711813882612Micromonospora aurantiaca ATCC 27029 chromosome, complete genomenitroreductase1e-39162
NC_014815:2055286:205789820578982058509612Micromonospora sp. L5 chromosome, complete genomenitroreductase2e-39161
NC_015953:4746983:474773247477324748322591Streptomyces sp. SirexAA-E chromosome, complete genomenitroreductase7e-37153
NC_007347:1215358:122629512262951226861567Ralstonia eutropha JMP134 chromosome 1, complete sequencehypothetical protein2e-35148
NC_017093:8518961:852667085266708527290621Actinoplanes missouriensis 431, complete genomeputative nitroreductase1e-34145
NC_008596:4104476:411218841121884112853666Mycobacterium smegmatis str. MC2 155, complete genomenitroreductase1e-32139
NC_012704:57437:636056360564213609Corynebacterium kroppenstedtii DSM 44385, complete genomehypothetical protein6e-23107
NC_021182:1346261:134686213468621347476615Clostridium pasteurianum BC1, complete genomenitroreductase2e-1065.9
NC_010170:4800000:490062249006224901239618Bordetella petrii, complete genomenitroreductase family protein6e-1063.9
NC_006322:1959918:196971619697161970339624Bacillus licheniformis ATCC 14580, complete genomeYdfN1e-0859.7
NC_008313:1956500:196327019632701963956687Ralstonia eutropha H16 chromosome 1, complete sequencePutative NAD(P)H nitroreductase YDGI2e-0858.9
NC_007645:3712272:372599537259953726612618Hahella chejuensis KCTC 2396, complete genomeNitroreductase2e-0858.5
NC_012914:5194791:521132352113235211961639Paenibacillus sp. JDR-2, complete genomenitroreductase4e-0754.7
NC_017188:3900951:390351039035103904148639Bacillus amyloliquefaciens TA208 chromosome, complete genomeNAD(P)H nitroreductase3e-0754.7
NC_017191:3901914:390520239052023905840639Bacillus amyloliquefaciens XH7 chromosome, complete genometagaturonate reductase (altronate oxidoreductase)3e-0754.7
NC_009659:1050532:109811310981131098748636Janthinobacterium sp. Marseille chromosome, complete genomeNADH oxidase1e-0653.1
NC_019842:3921424:392479739247973925435639Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein1e-0653.1
NC_020410:3868573:387203338720333872671639Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative dehydrogenase1e-0653.1
NC_009725:3878862:388151138815113882149639Bacillus amyloliquefaciens FZB42, complete genomeYdgI1e-0653.1
NC_020272:20435:386593865939297639Bacillus amyloliquefaciens IT-45, complete genomehypothetical protein2e-0652.8
NC_009138:668000:673858673858674460603Herminiimonas arsenicoxydans, complete genomeputative NAD(P)H nitroreductase2e-0652