Pre_GI: BLASTP Hits

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Query: NC_007384:1086025:1101667 Shigella sonnei Ss046, complete genome

Start: 1101667, End: 1102191, Length: 525

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1304398:131217113121711312833663Shigella sonnei 53G, complete genomeDNA methylase3e-95347
NC_009801:1392696:140171014017101402378669Escherichia coli E24377A, complete genomephage N-6-adenine-methyltransferase3e-63240
NC_015567:1127780:114833111483311149005675Serratia sp. AS9 chromosome, complete genomeDNA N-6-adenine-methyltransferase4e-40163
NC_015566:1127595:114814611481461148820675Serratia sp. AS12 chromosome, complete genomeDNA N-6-adenine-methyltransferase4e-40163
NC_012658:1810640:181895018189501819372423Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative phage N-6-adenine-methyltransferase1e-1375.9
NC_009495:1821938:183199518319951832417423Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA N-6-adenine-methyltransferase of bacteriophage1e-1375.9
NC_016845:1285435:129095012909501291477528Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,phage N-6-adenine-methyltransferase9e-1269.7
NC_002951:351029:367591367591368016426Staphylococcus aureus subsp. aureus COL, complete genomeprophage L54a, N-6-adenine-methyltransferase4e-1167.4
NC_015573:813000:831452831452831922471Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA N-6-adenine-methyltransferase8e-1166.6
NC_020126:2405175:241291924129192413437519Myxococcus stipitatus DSM 14675, complete genomeprophage L54a N-6-adenine-methyltransferase3e-1064.7
NC_007712:1182518:121645012164501216995546Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-0755.8
NC_011751:1405381:142298114229811423568588Escherichia coli UMN026 chromosome, complete genomeputative DNA N-6-adenine-methyltransferase from phage origin1e-0755.8
NC_011601:1039500:105597610559761056503528Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA methylase2e-0755.5
NC_008563:1175035:119146111914611192048588Escherichia coli APEC O1, complete genomeputative DNA N-6-adenine-methyltransferase of bacteriophage2e-0755.5
NC_011742:1177946:119498311949831195570588Escherichia coli S88 chromosome, complete genomeDNA N-6-adenine-methyltransferase from phage origin2e-0755.5
NC_002655:1332961:134765113476511348178528Escherichia coli O157:H7 EDL933, complete genomeputative DNA N-6-adenine-methyltransferase of bacteriophage BP-933W2e-0755.5
NC_007712:2897000:289850528985052899038534Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-0755.5
NC_011353:3276734:327673432767343277261528Escherichia coli O157:H7 str. EC4115 chromosome, complete genomephage N-6-adenine-methyltransferase2e-0755.5
NC_013008:3231414:323160532316053232132528Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDNA N-6-adenine-methyltransferase of bacteriophage BP-933W2e-0755.5
NC_007946:1239278:125410412541041254661558Escherichia coli UTI89, complete genomeputative DNA N-6-adenine-methyltransferase of bacteriophage2e-0755.5
NC_004431:1401681:141756914175691418126558Escherichia coli CFT073, complete genomePutative DNA N-6-adenine-methyltransferase of bacteriophage2e-0755.5
NC_013361:1558423:157524215752421575769528Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA methylase2e-0755.5
NC_013364:1183000:119890811989081199435528Escherichia coli O111:H- str. 11128, complete genomeputative DNA methylase2e-0755.5
NC_013364:2645438:264692026469202647447528Escherichia coli O111:H- str. 11128, complete genomeputative DNA methylase2e-0755.1
NC_013361:3112023:312596031259603126487528Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA methylase2e-0755.1
NC_011601:2614691:261522626152262615753528Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA methylase2e-0755.1
NC_007712:1219957:124506712450671245594528Sodalis glossinidius str. 'morsitans', complete genomephage DNA methyltransferase6e-0753.5
NC_020418:3133831:314585731458573146396540Morganella morganii subsp. morganii KT, complete genomehypothetical protein7e-0753.5