Pre_GI: BLASTP Hits

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Query: NC_007384:1086025:1087552 Shigella sonnei Ss046, complete genome

Start: 1087552, End: 1088157, Length: 606

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011740:1189455:119380811938081194404597Escherichia fergusonii ATCC 35469, complete genomeputative conserved flavoprotein9e-100362
NC_013361:1558423:155842315584231559001579Escherichia coli O26:H11 str. 11368 chromosome, complete genome5e-93340
NC_013364:1183000:118300911830091183587579Escherichia coli O111:H- str. 11128, complete genome5e-93340
NC_020063:2785652:279994227999422800538597Enterobacteriaceae bacterium strain FGI 57, complete genomeNAD(P)H:quinone oxidoreductase, type IV2e-91334
NC_003143:2101902:210443321044332105032600Yersinia pestis CO92, complete genomeTrpR binding protein WrbA2e-82305
NC_006155:2084669:208605920860592086658600Yersinia pseudotuberculosis IP 32953, complete genomeTrpR binding protein WrbA2e-82305
NC_010159:2128157:213157521315752132174600Yersinia pestis Angola, complete genomeflavoprotein WrbA2e-82305
NC_008150:1384102:138751213875121388111600Yersinia pestis Antiqua, complete genometrp repressor binding protein2e-82305
NC_010465:2582080:259737025973702597969600Yersinia pseudotuberculosis YPIII, complete genomeflavoprotein WrbA2e-82305
NC_009381:1414985:143115314311531431752600Yersinia pestis Pestoides F chromosome, complete genomeTrpR binding protein WrbA2e-82305
NC_014029:2388500:240503224050322405631600Yersinia pestis Z176003 chromosome, complete genomeTrpR binding protein WrbA2e-82305
NC_017154:2100587:210397521039752104574600Yersinia pestis D106004 chromosome, complete genomeTrpR binding protein WrbA2e-82305
NC_017160:2414000:243403824340382434637600Yersinia pestis D182038 chromosome, complete genomeTrpR binding protein WrbA2e-82305
NC_017168:3535786:355598135559813556580600Yersinia pestis A1122 chromosome, complete genomeNAD(P)H:quinone oxidoreductase2e-82305
NC_005810:1663672:168425416842541684868615Yersinia pestis biovar Microtus str. 91001, complete genomeTrpR binding protein WrbA2e-82304
NC_004088:2691565:271178127117812712395615Yersinia pestis KIM, complete genomeTrpR binding protein WrbA2e-82304
NC_013960:1778411:179732417973241797926603Nitrosococcus halophilus Nc4 chromosome, complete genomeflavoprotein WrbA5e-59227
NC_007484:2746078:276071227607122761314603Nitrosococcus oceani ATCC 19707, complete genomeFlavoprotein WrbA6e-59226
NC_007778:5079500:509362050936205094219600Rhodopseudomonas palustris HaA2, complete genomeFlavoprotein WrbA5e-49193
NC_003552:1397311:141496114149611415590630Methanosarcina acetivorans C2A, complete genomeTrpR binding protein WrbA5e-43174
NC_002971:1523065:152744415274441528037594Coxiella burnetii RSA 493, complete genomeflavoprotein WrbA, protein2e-25115
NC_002516:1031386:103657910365791037175597Pseudomonas aeruginosa PAO1, complete genomeTrp repressor binding protein WrbA7e-24110
NC_016613:2628843:264431526443152644884570Vibrio sp. EJY3 chromosome 1, complete sequenceTrp repressor-binding protein6e-23107
NC_004193:3215500:323153232315323232131600Oceanobacillus iheyensis HTE831, complete genometrp repressor binding protein2e-21102
NC_003295:1654000:167384516738451674450606Ralstonia solanacearum GMI1000, complete genomePROBABLE TRP REPRESSOR BINDING PROTEIN6e-21100
NC_014722:1084616:111229411122941112902609Burkholderia rhizoxinica HKI 454, complete genomeTrp repressor binding protein7e-21100
NC_006368:750356:776991776991777590600Legionella pneumophila str. Paris, complete genomehypothetical protein8e-21100
NC_006369:734080:762959762959763558600Legionella pneumophila str. Lens, complete genomehypothetical protein1e-2099.8
NC_015856:3436951:345017434501743450788615Collimonas fungivorans Ter331 chromosome, complete genometryptophan repressor binding protein2e-2099
NC_014311:1635408:166152416615241662117594Ralstonia solanacearum PSI07 chromosome, complete genomeFlavoprotein wrbA; tryptophan repressor binding protein2e-2098.6
NC_002942:675829:693107693107693706600Legionella pneumophila subsp. pneumophila str. Philadelphia 1,trp repressor binding protein3e-2098.2
NC_015276:2804874:280852928085292809125597Marinomonas mediterranea MMB-1 chromosome, complete genomeflavodoxin/nitric oxide synthase7e-2097.1
NC_014125:766576:786233786233786832600Legionella pneumophila 2300/99 Alcoy chromosome, complete genometrp repressor binding protein1e-1996.3
NC_009494:775676:800194800194800793600Legionella pneumophila str. Corby chromosome, complete genometrp repressor binding protein1e-1996.3
NC_014815:2055286:206949220694922070133642Micromonospora sp. L5 chromosome, complete genomeflavoprotein wrba5e-1994
NC_018581:32092:402284022840827600Gordonia sp. KTR9 chromosome, complete genomeputative flavodoxin3e-1891.7
NC_006322:1959918:197214519721451972756612Bacillus licheniformis ATCC 14580, complete genomehypothetical protein3e-1684.7
NC_014958:1335650:135394113539411354549609Deinococcus maricopensis DSM 21211 chromosome, complete genomeflavoprotein WrbA5e-1477.8
NC_009832:1280938:129767312976731298224552Serratia proteamaculans 568, complete genomeflavodoxin/nitric oxide synthase3e-0755.5
NC_009464:1397739:140416614041661404699534Uncultured methanogenic archaeon RC-I, complete genomepredicted redox-active protein (CxxC motif)3e-0755.5
NC_007511:3103999:310940031094003109954555Burkholderia sp. 383 chromosome 2, complete sequenceFlavodoxin/nitric oxide synthase3e-0755.1
NC_011002:564654:571290571290571850561Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative flavodoxin protein4e-0754.7
NC_016002:2825017:284690828469082847453546Pseudogulbenkiania sp. NH8B, complete genomeflavodoxin/nitric oxide synthase4e-0754.7
NC_002488:1638946:165238816523881652966579Xylella fastidiosa 9a5c, complete genometryptophan repressor binding protein5e-0754.3
NC_014310:1130344:113470811347081135262555Ralstonia solanacearum PSI07 megaplasmid, complete sequenceflavodoxin/nitric oxide synthase5e-0754.3