Some Help

Query: NC_007356:1221500:1241686 Dehalococcoides sp. CBDB1, complete genome

Start: 1241686, End: 1242198, Length: 513

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: This strain was isolated from an enriched chlorobenzene-dechlorinatng mixed culture from anoxic river sediment. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013552:1187299:122367812236781224187510Dehalococcoides sp. VS, complete genometranscriptional regulator, MarR family9e-2199.4
NC_007356:1165760:119502111950211195560540Dehalococcoides sp. CBDB1, complete genometranscriptional regulator, MarR family2e-1788.2
NC_013552:1240073:125951612595161259995480Dehalococcoides sp. VS, complete genometranscriptional regulator, MarR family1e-0755.8
NC_003888:4523500:452946845294684530016549Streptomyces coelicolor A3(2), complete genomeMarR-family transcriptional regulator1e-0652.4
NC_010572:4585500:459085645908564591413558Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative MarR-family transcriptional regulator2e-0652
NC_013552:1240073:126306412630641263534471Dehalococcoides sp. VS, complete genometranscriptional regulator, MarR family3e-0650.8