Pre_GI: BLASTP Hits

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Query: NC_007347:3612918:3619050 Ralstonia eutropha JMP134 chromosome 1, complete sequence

Start: 3619050, End: 3620819, Length: 1770

Host Lineage: Cupriavidus pinatubonensis; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is found in both soil and water and has great potential for use in bioremediation as it is capable of degrading a large list of pollutants including chlorinated aromatic compounds. The bacterium can utilize hydrogen, carbon dioxide, as well as organic compounds for growth and is a model organism for hydrogen oxidation as it can grow on hydrogen as the sole energy source. It was originally isolated due to its ability to degrade the herbicide 2,4-dichlorophenoxyacetic acid, which is due to the degradative functions being encoded on a plasmid (pJP4). Metabolically versatile bacterium. Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002947:1268089:1281215128121512829061692Pseudomonas putida KT2440, complete genomerecombinase-related protein2e-88327
NC_011769:3434744:3450826345082634525981773Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeRecombinase5e-60232
NC_007519:2773000:2776921277692127788551935Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein1e-59231
NC_016812:4246542:4250124425012442512931170Sinorhizobium fredii HH103, complete genomesite-specific recombinase6e-57222
NC_002678:3701500:3705162370516237068981737Mesorhizobium loti MAFF303099, complete genomesite-specific recombinase5e-56219
NC_009659:3520093:3543028354302835448781851Janthinobacterium sp. Marseille chromosome, complete genomesite-specific recombinase7e-51202
NC_007517:3524715:3540161354016135420291869Geobacter metallireducens GS-15, complete genomeResolvase-like:Recombinase3e-49196
NC_011979:773673:7870917870917889321842Geobacter sp. FRC-32, complete genomeRecombinase2e-48194
NC_007614:109000:1135631135631151971635Nitrosospira multiformis ATCC 25196 chromosome 1, completeRecombinase3e-47190
NC_011979:646518:6672356672356690941860Geobacter sp. FRC-32, complete genomeRecombinase8e-45182
NC_007493:1672163:1704748170474817062771530Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceputative site-specific recombinase2e-44180
NC_004547:2810151:2825271282527128268811611Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase/recombinase2e-43177
NC_011146:4196652:4202142420214242037791638Geobacter bemidjiensis Bem, complete genomeRecombinase3e-40167
NC_011415:600375:6208596208596223851527Escherichia coli SE11 chromosome, complete genomeputative phage recombinase3e-39164
NC_012559:854507:8853478853478863481002Laribacter hongkongensis HLHK9, complete genomeRecombinase3e-39163
NC_011748:824367:8316568316568331821527Escherichia coli 55989, complete genomeputative site-specific invertase; DLP12 prophage9e-39162
CU928145:824367:8316568316568331821527Escherichia coli 55989 chromosome, complete genomeputative site-specific invertase; DLP12 prophage9e-39162
AC_000091:558920:5681255681255696511527Escherichia coli W3110 DNA, complete genomepredicted recombinase3e-38160
NC_000913:558920:5681255681255696511527Escherichia coli K12, complete genomeDLP12 prophage; predicted recombinase3e-38160
NC_010473:498252:5074575074575089831527Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted recombinase3e-38160
NC_011353:2957962:2968757296875729702831527Escherichia coli O157:H7 str. EC4115 chromosome, complete genomerecombinase family protein3e-38160
NC_012759:461680:4708854708854724111527Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative recombinase3e-38160
NC_012947:3231893:3243361324336132448871527Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase3e-38160
NC_012967:531000:5407925407925423181527Escherichia coli B str. REL606 chromosome, complete genomeputative recombinase3e-38160
NC_013008:2910567:2923628292362829251541527Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDLP12 prophage recombinase3e-38160
NC_013941:699286:7082487082487097741527Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDLP12 prophage; recombinase3e-38160
NC_014006:850763:8565128565128582571746Sphingobium japonicum UT26S chromosome 1, complete genomeinvertase/recombinase like protein2e-38160
NC_016614:1178000:1189433118943311912291797Vibrio sp. EJY3 chromosome 2, complete sequencesite-specific recombinase4e-38159
NC_003910:486776:4939534939534959982046Colwellia psychrerythraea 34H, complete genomeputative site-specific recombinase7e-37155
NC_014375:1242750:1243226124322612449291704Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRecombinase4e-36153
NC_010338:3743000:3747659374765937493741716Caulobacter sp. K31, complete genomeRecombinase6e-35149
NC_018678:1820390:1826786182678618284561671Alteromonas macleodii str. 'English Channel 673' chromosome,site-specific recombinase2e-31137
NC_012988:2455807:2460335246033524620831749Methylobacterium extorquens DM4, complete genomerecombinase6e-30132
NC_002947:3404000:3412988341298834146131626Pseudomonas putida KT2440, complete genomephage recombinase, putative3e-29130
NC_013850:2103469:2133323213332321348941572Klebsiella variicola At-22 chromosome, complete genomeResolvase domain protein7e-27122
NC_011283:2185462:2199912219991222014831572Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family7e-26119
NC_020209:4549563:4562999456299945646901692Pseudomonas poae RE*1-1-14, complete genomerecombinase1e-25118
NC_009832:1664238:1681671168167116831821512Serratia proteamaculans 568, complete genomeResolvase domain2e-25117
NC_007384:2007467:2008715200871520102351521Shigella sonnei Ss046, complete genomehypothetical bacteriophage protein2e-25117
NC_009801:1392696:1412677141267714141971521Escherichia coli E24377A, complete genomeputative recombinase6e-25116
NC_008463:1912348:1939714193971419412911578Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible recombinase8e-25115
NC_015633:1702000:1709920170992017117971878Vibrio anguillarum 775 chromosome chromosome I, complete sequenceSite-specific recombinase2e-24114
NC_008781:2575213:2579464257946425810861623Polaromonas naphthalenivorans CJ2, complete genomeRecombinase5e-24113
NC_005070:1088808:1099790109979011016881899Synechococcus sp. WH 8102, complete genomepossible site-specific recombinase1e-23111
NC_007492:3954345:3962384396238439639821599Pseudomonas fluorescens PfO-1, complete genomeRecombinase2e-23110
NC_017047:3085000:3123842312384231255751734Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein3e-22107
NC_004578:2560473:2566716256671625683201605Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-1997.4
NC_014121:2330451:2335767233576723375361770Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-1997.1
NC_009778:2227627:2270858227085822726601803Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1895.5
NC_020211:2012480:2021007202100720226861680Serratia marcescens WW4, complete genomeputative recombinase, DLP12 prophage7e-1892.8
NC_017047:1796000:1800214180021418019651752Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein3e-1790.9
NC_007384:1086025:1089944108994410911881245Shigella sonnei Ss046, complete genomehypothetical protein5e-1686.7
NC_010501:908000:9248249248249264701647Pseudomonas putida W619, complete genomeResolvase domain1e-1585.1
NC_005070:1331741:1342597134259713446002004Synechococcus sp. WH 8102, complete genomepartial homology to phage recombinase7e-1479.3
NC_016616:760145:7740577740577757781722Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase, DNA invertase Pin7e-1376.3
NC_016822:1431200:1439276143927614411591884Shigella sonnei 53G, complete genomehypothetical protein1e-1172
NC_017986:5509569:5518050551805055194201371Pseudomonas putida ND6 chromosome, complete genomephage recombinase3e-1170.5
NC_014121:2514544:2525778252577825277872010Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein6e-1169.7
NC_021066:3201500:3217811321781132193071497Raoultella ornithinolytica B6, complete genomeputative recombinase, DLP12 prophage5e-1066.6
NC_012667:931390:9402429402429419121671Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein7e-0962.8
NC_012583:440420:4472494472494489071659Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein1e-0862.4
NC_009456:787322:8150358150358166931659Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein1e-0862.4