Pre_GI: BLASTP Hits

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Query: NC_007336:66000:74326 Ralstonia eutropha JMP134 megaplasmid, complete sequence

Start: 74326, End: 75555, Length: 1230

Host Lineage: Cupriavidus pinatubonensis; Cupriavidus; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism is found in both soil and water and has great potential for use in bioremediation as it is capable of degrading a large list of pollutants including chlorinated aromatic compounds. The bacterium can utilize hydrogen, carbon dioxide, as well as organic compounds for growth and is a model organism for hydrogen oxidation as it can grow on hydrogen as the sole energy source. It was originally isolated due to its ability to degrade the herbicide 2,4-dichlorophenoxyacetic acid, which is due to the degradative functions being encoded on a plasmid (pJP4). Metabolically versatile bacterium. Cupriavidus necator also known as Ralstonia eutropha is a soil bacterium with diverse metabolic abilities. Strains of this organism are resistant to high levels of copper or are able to degrade chloroaromatic compounds such as halobenzoates and nitrophenols making them useful for bioremediation.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010623:1961685:2016998201699820182271230Burkholderia phymatum STM815 chromosome 2, complete sequenceextracellular ligand-binding receptor0641
NC_015723:961909:9817559817559829961242Cupriavidus necator N-1 chromosome 2, complete sequenceABC transporter permease8e-145513
NC_010511:4313769:4336960433696043381801221Methylobacterium sp. 4-46 chromosome, complete genomeextracellular ligand-binding receptor4e-122438
NC_003047:3202125:3216094321609432172991206Sinorhizobium meliloti 1021, complete genomePUTATIVE PERIPLASMIC BINDING ABC TRANSPORTER PROTEIN8e-116417
NC_010511:6067000:6110790611079061119801191Methylobacterium sp. 4-46 chromosome, complete genomebranched chain amino acid ABC transporter substrate-binding protein7e-114410
NC_017082:5925357:5928737592873759299661230Bradyrhizobium sp. S23321, complete genomeABC transporter substrate-binding protein8e-114410
NC_007953:504939:5285755285755297771203Burkholderia xenovorans LB400 chromosome 3, complete sequenceABC branched chain amino acid family transporter, periplasmic ligand binding protein4e-112405
NC_009434:3434381:3459741345974134607931053Pseudomonas stutzeri A1501, complete genomeABC transporter substrate-binding protein1e-110400
NC_011894:7109374:7130915713091571321771263Methylobacterium nodulans ORS 2060, complete genomeExtracellular ligand-binding receptor2e-110399
NC_007643:3799425:3802218380221838034321215Rhodospirillum rubrum ATCC 11170, complete genomeamide-urea binding protein4e-110398
NC_015422:1694363:1715960171596017171801221Alicycliphilus denitrificans K601 chromosome, complete genomeextracellular ligand-binding receptor3e-106385
NC_007908:1108494:1151700115170011528931194Rhodoferax ferrireducens T118, complete genomeextracellular ligand-binding receptor8e-106384
NC_010511:6067000:6067154606715460683591206Methylobacterium sp. 4-46 chromosome, complete genomeputative ABC branched-chain amino transporter, periplasmic binding protein5e-105381
NC_017249:2109843:2127210212721021284181209Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-84313
NC_011894:7702000:772080677208067721309504Methylobacterium nodulans ORS 2060, complete genome1e-43177
NC_010170:4739925:4743625474362547448961272Bordetella petrii, complete genomeABC transporter substrate-binding protein7e-21102
NC_010170:1219641:1241603124160312428051203Bordetella petrii, complete genomeputative Substrate-binding periplasmic protein1e-20100
NC_009720:464078:4676714676714690081338Xanthobacter autotrophicus Py2, complete genomeextracellular ligand-binding receptor1e-1998.2
NC_011892:306437:3064373064373076721236Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeExtracellular ligand-binding receptor5e-1892.4
NC_014355:220002:2318072318072330091203Candidatus Nitrospira defluvii, complete genomeputative ABC transporter Leu/Ile/Val-binding protein1e-1687.8
NC_015376:3631392:3634852363485236361381287Burkholderia gladioli BSR3 chromosome chromosome 2, completeExtracellular ligand-binding receptor1e-1584.7
NC_010511:637214:6536716536716549121242Methylobacterium sp. 4-46 chromosome, complete genomeextracellular ligand-binding receptor1e-1481.3
NC_009937:5033152:5040446504044650416151170Azorhizobium caulinodans ORS 571, complete genomeputative substrate-binding protein2e-1480.1
NC_014828:2497462:2514413251441325156571245Ethanoligenens harbinense YUAN-3 chromosome, complete genomeABC transporter, periplasmic solute-binding protein, putative2e-1377.8
NC_011004:4073916:4114946411494641162981353Rhodopseudomonas palustris TIE-1, complete genomebranched-chain amino acid ABC transporter, periplasmic binding protein, putative3e-1377
NC_014834:2264108:2301627230162723029791353Rhodopseudomonas palustris DX-1 chromosome, complete genomeextracellular ligand-binding receptor4e-1376.3
NC_016147:3023180:3043998304399830451161119Pseudoxanthomonas spadix BD-a59 chromosome, complete genometwin-arginine translocation pathway signal1e-1274.7
NC_014831:2133060:2141827214182721430561230Thermaerobacter marianensis DSM 12885 chromosome, complete genomeamino acid/amide ABC transporter substrate-binding protein, HAAT family2e-1274.3
NC_015724:129331:1474211474211486171197Cupriavidus necator N-1 plasmid BB2p, complete sequencebranched-chain amino acid ABC transport system permease protein5e-1272.8
NC_015458:3077804:3097937309793730991391203Pusillimonas sp. T7-7 chromosome, complete genomeextracellular ligand-binding receptor7e-1272
NC_009437:2579161:2621677262167726229241248Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeextracellular ligand-binding receptor2e-1170.9
NC_020453:3179346:3179346317934631805841239Agromonas oligotrophica S58 DNA, complete genomealiphatic amidase expression-regulating protein3e-1169.7
NC_014974:1076565:1094174109417410953641191Thermus scotoductus SA-01 chromosome, complete genomeextracellular ligand-binding receptor7e-1168.6
NC_009437:2579161:2601627260162726028081182Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeextracellular ligand-binding receptor1e-1067.8
NC_015723:1448000:1454414145441414555351122Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein2e-1067
NC_012988:4292815:4316974431697443181311158Methylobacterium extorquens DM4, complete genomeextracellular ligand-binding receptor3e-1066.6
NC_011661:961129:9625519625519636811131Dictyoglomus turgidum DSM 6724, complete genomeExtracellular ligand-binding receptor2e-0963.9
NC_011297:787932:7916897916897928191131Dictyoglomus thermophilum H-6-12, complete genomebranched chain amino acid ABC transporter6e-0962.4
NC_020210:2044944:2053712205371220549561245Geobacillus sp. GHH01, complete genomeputative leucine ABC transporter substrate-binding protein1e-0861.6
NC_004113:1137754:1151497115149711528101314Thermosynechococcus elongatus BP-1, complete genomeABC transporter substrate-binding protein1e-0861.6
NC_008212:2978786:2994180299418029954721293Haloquadratum walsbyi DSM 16790, complete genomeABC-type urea transport systems,substrate-binding protein2e-0860.8
NC_008576:3331825:3339175333917533425313357Magnetococcus sp. MC-1, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)2e-0860.5
NC_009617:3184924:3218440321844032196211182Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeextracellular ligand-binding receptor3e-0859.7
NC_006396:320853:3254713254713268411371Haloarcula marismortui ATCC 43049 chromosome I, complete sequenceleucine-binding protein4e-0859.3
NC_016585:1004000:1019348101934810205441197Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencebranched chain amino acid ABC transporter substrate-binding protein4e-0859.3
NC_011757:1553500:1560502156050215618121311Methylobacterium chloromethanicum CM4, complete genomeputative substrate-binding component of ABC transporter9e-0858.5
NC_012988:1817000:1824043182404318253291287Methylobacterium extorquens DM4, complete genomealiphatic amidase expression-regulating protein , amiC8e-0858.5
NC_013422:1732677:1738955173895517401991245Halothiobacillus neapolitanus c2, complete genomeurea ABC transporter, urea binding protein1e-0757.8
NC_010995:1101614:1123276112327611244721197Cellvibrio japonicus Ueda107, complete genomeamide-urea binding protein2e-0757.8
NC_015727:1294532:1319872131987213210951224Cupriavidus necator N-1 plasmid BB1p, complete sequenceABC transporter substrate-binding protein2e-0757.4
NC_014641:20103:4203442034432091176Achromobacter xylosoxidans A8 plasmid pA81, complete sequenceextracellular ligand-binding receptor 62e-0757.4
NC_013894:672840:6870666870666882801215Thermocrinis albus DSM 14484 chromosome, complete genomeurea ABC transporter, urea binding protein2e-0757.4
NC_010505:4676403:4699711469971147008651155Methylobacterium radiotolerans JCM 2831, complete genomeExtracellular ligand-binding receptor4e-0756.6
NC_012880:913698:9164499164499176931245Dickeya dadantii Ech703, complete genomeExtracellular ligand-binding receptor6e-0755.8
NC_010475:420978:4209784209784222941317Synechococcus sp. PCC 7002, complete genomeABC transporter, branched-chain amino acid transport, periplasmic binding protein7e-0755.5
NC_014828:2497462:2506564250656425077631200Ethanoligenens harbinense YUAN-3 chromosome, complete genomeExtracellular ligand-binding receptor9e-0755.1
NC_015387:2072237:2073114207311420742381125Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeExtracellular ligand-binding receptor1e-0654.7
NC_012587:3613162:3635526363552636367191194Rhizobium sp. NGR234, complete genomeputative extracellular ligand-binding receptor2e-0653.9
NC_008786:1507139:1526660152666015278381179Verminephrobacter eiseniae EF01-2, complete genomeExtracellular ligand-binding receptor3e-0653.5
NC_007963:1582089:1604636160463616058501215Chromohalobacter salexigens DSM 3043, complete genomeExtracellular ligand-binding receptor7e-0652.4
NC_015318:1583839:1594624159462415957661143Hippea maritima DSM 10411 chromosome, complete genomeExtracellular ligand-binding receptor9e-0652