Pre_GI: BLASTN Hits

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Query: NC_007333:430000 Thermobifida fusca YX, complete genome

Start: 430000, End: 454495, Length: 24496

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014314:1230687*1230687125593425248Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, complete3e-0971.9BLASTN svgBLASTP svg
NC_009664:32452103245210326681721608Kineococcus radiotolerans SRS30216, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_011887:11061811061813688826271Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete5e-1177.8BLASTN svgBLASTP svg
NC_010397:81554981554984067525127Mycobacterium abscessus chromosome Chromosome, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_018524:12791561279156130303023875Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome2e-22115BLASTN svgBLASTP svg
NC_014211:43961143961146090921299Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid1e-20109BLASTN svgBLASTP svg
NC_015379:1151143*1151143118279531653Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,1e-1489.7BLASTN svgBLASTP svg
NC_004129:5723787*5723787575817934393Pseudomonas fluorescens Pf-5, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_007492:5214709*5214709524168426976Pseudomonas fluorescens PfO-1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_018750:3249756*3249756327318823433Streptomyces venezuelae ATCC 10712, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007333:39579395797952139943Thermobifida fusca YX, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013510:24328792432879245155818680Thermomonospora curvata DSM 43183, complete genome3e-1281.8BLASTN svgBLASTP svg