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Query: NC_007333:3244572 Thermobifida fusca YX, complete genome

Start: 3244572, End: 3269768, Length: 25197

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:38931873893187391788524699Streptomyces coelicolor A3(2), complete genome4e-67264BLASTN svgBLASTP svg
NC_013169:25815002581500260290921410Kytococcus sedentarius DSM 20547, complete genome3e-49204BLASTN svgBLASTP svg
NC_018681:441014*44101447306232049Nocardia brasiliensis ATCC 700358 chromosome, complete genome2e-26129BLASTN svgBLASTP svg
NC_013172:28777222877722290914331422Brachybacterium faecium DSM 4810, complete genome9e-22113BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome6e-20107BLASTN svgBLASTP svg
NC_008578:22267782226778224692120144Acidothermus cellulolyticus 11B, complete genome6e-20107BLASTN svgBLASTP svg
NC_013131:97115089711508973462123114Catenulispora acidiphila DSM 44928, complete genome3e-18101BLASTN svgBLASTP svg
NC_007164:2261644*2261644228587624233Corynebacterium jeikeium K411, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013510:5115500*5115500514328527786Thermomonospora curvata DSM 43183, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_007677:1354500*1354500141209957600Salinibacter ruber DSM 13855, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007333:2093167*2093167211709923933Thermobifida fusca YX, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_001263:13786051378605140253323929Deinococcus radiodurans R1 chromosome 1, complete sequence3e-0971.9BLASTN svgBLASTP svg
NC_012526:2483000*2483000250920026201Deinococcus deserti VCD115, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013947:65858476585847662674840902Stackebrandtia nassauensis DSM 44728 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_021064:20017862001786202537723592Propionibacterium avidum 44067, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013406:78130878130880961728310Paenibacillus sp. Y412MC10 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012704:2296500*2296500231998023481Corynebacterium kroppenstedtii DSM 44385, complete genome3e-0661.9BLASTN svgBLASTP svg