Query: NC_007333:2674596 Thermobifida fusca YX, complete genome
Start: 2674596, End: 2700477, Length: 25882
Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003888:5443832 | 5443832 | 5464599 | 20768 | Streptomyces coelicolor A3(2), complete genome | 2e-47 | 198 | BLASTN svg | BLASTP svg |
NC_013093:7222000 | 7222000 | 7245263 | 23264 | Actinosynnema mirum DSM 43827, complete genome | 4e-36 | 161 | BLASTN svg | BLASTP svg |
NC_009664:1434974* | 1434974 | 1457886 | 22913 | Kineococcus radiotolerans SRS30216, complete genome | 7e-35 | 157 | BLASTN svg | BLASTP svg |
NC_015588:95697 | 95697 | 120567 | 24871 | Isoptericola variabilis 225 chromosome, complete genome | 4e-33 | 151 | BLASTN svg | BLASTP svg |
NC_013131:7945280 | 7945280 | 7998507 | 53228 | Catenulispora acidiphila DSM 44928, complete genome | 6e-29 | 137 | BLASTN svg | BLASTP svg |
NC_008541:3282415* | 3282415 | 3307664 | 25250 | Arthrobacter sp. FB24 chromosome 1, complete sequence | 2e-23 | 119 | BLASTN svg | BLASTP svg |
NC_011886:2950411* | 2950411 | 2986599 | 36189 | Arthrobacter chlorophenolicus A6, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_014211:439611 | 439611 | 460909 | 21299 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_011894:3885490 | 3885490 | 3908120 | 22631 | Methylobacterium nodulans ORS 2060, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_004463:3857763 | 3857763 | 3876804 | 19042 | Bradyrhizobium japonicum USDA 110, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_014830:532122 | 532122 | 550970 | 18849 | Intrasporangium calvum DSM 43043 chromosome, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_016002:2453919 | 2453919 | 2500295 | 46377 | Pseudogulbenkiania sp. NH8B, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_012724:2443500 | 2443500 | 2464058 | 20559 | Burkholderia glumae BGR1 chromosome 1, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_013530:423540 | 423540 | 446498 | 22959 | Xylanimonas cellulosilytica DSM 15894, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_008536:5259438 | 5259438 | 5279365 | 19928 | Solibacter usitatus Ellin6076, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_007498:2046935 | 2046935 | 2069204 | 22270 | Pelobacter carbinolicus DSM 2380, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_012791:4680500 | 4680500 | 4700019 | 19520 | Variovorax paradoxus S110 chromosome 1, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013165:2240377 | 2240377 | 2273761 | 33385 | Slackia heliotrinireducens DSM 20476, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013172:953772 | 953772 | 976440 | 22669 | Brachybacterium faecium DSM 4810, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014165:92500 | 92500 | 110099 | 17600 | Thermobispora bispora DSM 43833 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013947:4413382 | 4413382 | 4437099 | 23718 | Stackebrandtia nassauensis DSM 44728 chromosome, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |