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Query: NC_007333:2674596 Thermobifida fusca YX, complete genome

Start: 2674596, End: 2700477, Length: 25882

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:54438325443832546459920768Streptomyces coelicolor A3(2), complete genome2e-47198BLASTN svgBLASTP svg
NC_013093:72220007222000724526323264Actinosynnema mirum DSM 43827, complete genome4e-36161BLASTN svgBLASTP svg
NC_009664:1434974*1434974145788622913Kineococcus radiotolerans SRS30216, complete genome7e-35157BLASTN svgBLASTP svg
NC_015588:956979569712056724871Isoptericola variabilis 225 chromosome, complete genome4e-33151BLASTN svgBLASTP svg
NC_013131:79452807945280799850753228Catenulispora acidiphila DSM 44928, complete genome6e-29137BLASTN svgBLASTP svg
NC_008541:3282415*3282415330766425250Arthrobacter sp. FB24 chromosome 1, complete sequence2e-23119BLASTN svgBLASTP svg
NC_011886:2950411*2950411298659936189Arthrobacter chlorophenolicus A6, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014211:43961143961146090921299Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid3e-1591.7BLASTN svgBLASTP svg
NC_011894:38854903885490390812022631Methylobacterium nodulans ORS 2060, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004463:38577633857763387680419042Bradyrhizobium japonicum USDA 110, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014830:53212253212255097018849Intrasporangium calvum DSM 43043 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_016002:24539192453919250029546377Pseudogulbenkiania sp. NH8B, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012724:24435002443500246405820559Burkholderia glumae BGR1 chromosome 1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013530:42354042354044649822959Xylanimonas cellulosilytica DSM 15894, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008536:52594385259438527936519928Solibacter usitatus Ellin6076, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007498:20469352046935206920422270Pelobacter carbinolicus DSM 2380, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012791:46805004680500470001919520Variovorax paradoxus S110 chromosome 1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013165:22403772240377227376133385Slackia heliotrinireducens DSM 20476, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013172:95377295377297644022669Brachybacterium faecium DSM 4810, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014165:925009250011009917600Thermobispora bispora DSM 43833 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013947:44133824413382443709923718Stackebrandtia nassauensis DSM 44728 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg