Pre_GI: BLASTN Hits

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Query: NC_007333:1 Thermobifida fusca YX, complete genome

Start: 1, End: 18202, Length: 18202

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008578:2431074*2431074245799926926Acidothermus cellulolyticus 11B, complete genome1e-78301BLASTN svgBLASTP svg
NC_015138:111600416004Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete1e-1075.8BLASTN svgBLASTP svg
NC_008782:2568027*2568027262351455488Acidovorax sp. JS42, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013093:111124311243Actinosynnema mirum DSM 43827, complete genome5e-81309BLASTN svgBLASTP svg
NC_014910:19125521912552193924626695Alicycliphilus denitrificans BC chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_015422:20786182078618211032231705Alicycliphilus denitrificans K601 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_015422:111870118701Alicycliphilus denitrificans K601 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_014318:369136912533921649Amycolatopsis mediterranei U32 chromosome, complete genome9e-83315BLASTN svgBLASTP svg
NC_015564:4727630*4727630475399926370Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014218:4424*44242609921676Arcanobacterium haemolyticum DSM 20595 chromosome, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_014550:3839389*3839389387099931611Arthrobacter arilaitensis Re117, complete genome2e-18101BLASTN svgBLASTP svg
NC_014550:7560*75603657129012Arthrobacter arilaitensis Re117, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_008711:4579997*4579997460549925503Arthrobacter aurescens TC1, complete genome1e-35159BLASTN svgBLASTP svg
NC_011886:4376261*4376261440799931739Arthrobacter chlorophenolicus A6, complete genome3e-42180BLASTN svgBLASTP svg
NC_015145:4232283*4232283426249930217Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genome2e-37165BLASTN svgBLASTP svg
NC_008541:4679022*4679022470999930978Arthrobacter sp. FB24 chromosome 1, complete sequence3e-42180BLASTN svgBLASTP svg
NC_018531:4718904*4718904474449925596Arthrobacter sp. Rue61a chromosome, complete genome1e-35159BLASTN svgBLASTP svg
NC_008702:111506115061Azoarcus sp. BH72, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_006513:16954871695487172039324907Azoarcus sp. EbN1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013854:31263853126385315026623882Azospirillum sp. B510, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_021150:5298500*5298500533099932500Azotobacter vinelandii CA6, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_012560:5338707*5338707537299934293Azotobacter vinelandii DJ, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_008618:10915*109153564524731Bifidobacterium adolescentis ATCC 15703, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_018720:2138180*2138180217949941320Bifidobacterium asteroides PRL2011 chromosome, complete genome1e-57232BLASTN svgBLASTP svg
NC_018720:47984*479847823030247Bifidobacterium asteroides PRL2011 chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_010816:1660066*1660066168402823963Bifidobacterium longum DJO10A, complete genome7e-28133BLASTN svgBLASTP svg
NC_015052:2383865*2383865240599922135Bifidobacterium longum subsp. infantis 157F, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_015067:2371428*2371428239399922572Bifidobacterium longum subsp. longum JCM 1217, complete genome9e-86325BLASTN svgBLASTP svg
NC_002927:37168943716894377039253499Bordetella bronchiseptica RB50, complete genome1e-1385.7BLASTN svgBLASTP svg
NC_008390:987052987052101116924118Burkholderia cepacia AMMD chromosome 1, complete sequence9e-1279.8BLASTN svgBLASTP svg
NC_012724:1*11851018510Burkholderia glumae BGR1 chromosome 1, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_010804:52000*520007319121192Burkholderia multivorans ATCC 17616 chromosome 1, complete3e-0867.9BLASTN svgBLASTP svg
NC_010804:996837996837104668249846Burkholderia multivorans ATCC 17616 chromosome 1, complete2e-1281.8BLASTN svgBLASTP svg
NC_009076:75535*7553510652630992Burkholderia pseudomallei 1106a chromosome I, complete sequence9e-0969.9BLASTN svgBLASTP svg
NC_014151:4106624*4106624413399927376Cellulomonas flavigena DSM 20109 chromosome, complete genome4e-125456BLASTN svgBLASTP svg
NC_002932:2142000*2142000216349921500Chlorobium tepidum TLS, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_005085:111651116511Chromobacterium violaceum ATCC 12472, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_014614:554949*55494957879923851Clostridium sticklandii, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_015856:112197121971Collimonas fungivorans Ter331 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_015389:2101841*2101841212999928159Coriobacterium glomerans PW2 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_007164:2446879*2446879247349926621Corynebacterium jeikeium K411, complete genome8e-37163BLASTN svgBLASTP svg
NC_015673:1*12009920099Corynebacterium resistens DSM 45100 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010545:11950*119506085348904Corynebacterium urealyticum DSM 7109, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_020050:41342641342644399930574Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partial8e-0660BLASTN svgBLASTP svg
NC_007298:13348761334876136112026245Dechloromonas aromatica RCB, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_014972:37716423771642379462522984Desulfobulbus propionicus DSM 2032 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_014844:35826773582677360568023004Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013204:3613824*3613824364749933676Eggerthella lenta DSM 2243, complete genome8e-34153BLASTN svgBLASTP svg
NC_011979:4293859*4293859431999926141Geobacter sp. FRC-32, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014323:111610816108Herbaspirillum seropedicae SmR1 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_014830:4012999*4012999403999927001Intrasporangium calvum DSM 43043 chromosome, complete genome2e-74287BLASTN svgBLASTP svg
NC_014830:13179*131794609932921Intrasporangium calvum DSM 43043 chromosome, complete genome2e-74287BLASTN svgBLASTP svg
NC_006087:111092810928Leifsonia xyli subsp. xyli str. CTCB07, complete genome6e-47196BLASTN svgBLASTP svg
NC_010524:1005355*1005355103237727023Leptothrix cholodnii SP-6, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015387:10029551002955103001227058Marinithermus hydrothermalis DSM 14884 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013946:415028*41502844572730700Meiothermus ruber DSM 1279 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_008825:4025705*4025705405199926295Methylibium petroleiphilum PM1, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015125:1597600*1597600161635218753Microbacterium testaceum StLB037, complete genome1e-26129BLASTN svgBLASTP svg
NC_012803:3691*36914264438954Micrococcus luteus NCTC 2665, complete genome1e-81311BLASTN svgBLASTP svg
NC_007644:3229*32292661523387Moorella thermoacetica ATCC 39073, complete genome8e-0660BLASTN svgBLASTP svg
NC_008595:11766581176658119686720210Mycobacterium avium 104, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_002946:618439*61843964067022232Neisseria gonorrhoeae FA 1090, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_003116:1488576*1488576150859920024Neisseria meningitidis Z2491, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_014935:1668461*1668461169279424334Nitratifractor saLSUginis DSM 16511 chromosome, complete genome3e-21111BLASTN svgBLASTP svg
NC_014210:5752651*5752651577999927349Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,01818BLASTN svgBLASTP svg
NC_014211:43961143961146090921299Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid8e-0660BLASTN svgBLASTP svg
NC_010628:36751283675128369309917972Nostoc punctiforme PCC 73102, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014363:2035141*2035141206649931359Olsenella uli DSM 7084 chromosome, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_007498:10721121072112109809925988Pelobacter carbinolicus DSM 2380, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_006085:2544421*2544421257099926579Propionibacterium acnes KPA171202, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_006085:15246152464566630421Propionibacterium acnes KPA171202, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_014039:2479500*2479500250599926500Propionibacterium acnes SK137 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_014039:15236152364170426469Propionibacterium acnes SK137 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_011059:112057920579Prosthecochloris aestuarii DSM 271, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_016002:111459914599Pseudogulbenkiania sp. NH8B, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_002516:6255854*6255854627999924146Pseudomonas aeruginosa PAO1, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_008027:1559083*1559083158236923287Pseudomonas entomophila L48, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_004129:4993974*4993974502072326750Pseudomonas fluorescens Pf-5, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_009512:111886218862Pseudomonas putida F1, complete genome8e-0660BLASTN svgBLASTP svg
NC_015312:1*12465124651Pseudonocardia dioxanivorans CB1190 chromosome, complete genome7e-96359BLASTN svgBLASTP svg
NC_007347:1*12859628596Ralstonia eutropha JMP134 chromosome 1, complete sequence9e-0969.9BLASTN svgBLASTP svg
NC_012856:112296322963Ralstonia pickettii 12D chromosome 1, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_010682:112474724747Ralstonia pickettii 12J chromosome 1, complete sequence3e-0867.9BLASTN svgBLASTP svg
NC_003295:3688000*3688000372599938000Ralstonia solanacearum GMI1000, complete genome9e-0969.9BLASTN svgBLASTP svg
NC_015677:112102721027Ramlibacter tataouinensis TTB310 chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_008271:35909359096246126553Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence4e-1487.7BLASTN svgBLASTP svg
NC_007925:4060635*4060635408822427590Rhodopseudomonas palustris BisB18, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_007958:498549852839523411Rhodopseudomonas palustris BisB5, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_013521:4240468*4240468426799927532Sanguibacter keddieii DSM 10542, complete genome2e-126460BLASTN svgBLASTP svg
NC_013165:3146000*3146000318049934500Slackia heliotrinireducens DSM 20476, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_003888:4251867*4251867430640654540Streptomyces coelicolor A3(2), complete genome0888BLASTN svgBLASTP svg
NC_021177:3997727*3997727401925421528Streptomyces fulvissimus DSM 40593, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_015953:3684065*3684065371159927535Streptomyces sp. SirexAA-E chromosome, complete genome6e-124452BLASTN svgBLASTP svg
NC_018750:3964784*3964784398396119178Streptomyces venezuelae ATCC 10712, complete genome4e-119436BLASTN svgBLASTP svg
NC_015957:74084667408466745609947634Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013595:10329633*103296331035599926367Streptosporangium roseum DSM 43021, complete genome0922BLASTN svgBLASTP svg
NC_006177:3549467*3549467357099921533Symbiobacterium thermophilum IAM 14863, complete genome2e-25125BLASTN svgBLASTP svg
NC_007513:1764739*1764739178968624948Synechococcus sp. CC9902, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_010475:2896000*2896000291973123732Synechococcus sp. PCC 7002, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_011662:114205242052Thauera sp. MZ1T, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_014831:8965*89654370634742Thermaerobacter marianensis DSM 12885 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_007333:3626510*3626510365399927490Thermobifida fusca YX, complete genome012300BLASTN svgBLASTP svg
NC_011959:972798*97279899909326296Thermomicrobium roseum DSM 5159, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_013510:1*11865618656Thermomonospora curvata DSM 43183, complete genome01374BLASTN svgBLASTP svg
NC_007404:974461974461101843943979Thiobacillus denitrificans ATCC 25259, complete genome2e-0971.9BLASTN svgBLASTP svg