Pre_GI: BLASTP Hits

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Query: NC_007333:810381:846571 Thermobifida fusca YX, complete genome

Start: 846571, End: 850536, Length: 3966

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008782:2326439:2326439232643923289792541Acidovorax sp. JS42, complete genomehypothetical protein3e-20101
NC_017093:6461486:6467914646791464728604947Actinoplanes missouriensis 431, complete genomehypothetical protein4e-1584.7
NC_018679:1738126:1742905174290517478664962Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completeplasmid-like protein5e-1377.8
NC_014011:1354261:1360055136005513635013447Aminobacterium colombiense DSM 12261 chromosome, complete genomehypothetical protein2e-0862.8
NC_006513:148950:1489501489501534854536Azoarcus sp. EbN1, complete genomeN6 adenine-specific DNA methyltransferase9e-1170.5
NC_014219:3188128:3205971320597132080942124Bacillus selenitireducens MLS10 chromosome, complete genomeN-6 DNA methylase1e-0863.2
NC_004463:925140:9283659283659322703906Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein5e-25117
NC_017249:8510121:8510121851012185140593939Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein8e-28127
NC_009076:3564500:3588455358845535928404386Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein6e-26120
NC_006350:845513:8818058818058860494245Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein2e-1999.4
NC_010424:422029:4280804280804328254746Candidatus Desulforudis audaxviator MP104C, complete genomehypothetical protein1e-50202
NC_014151:3663295:3666135366613536701033969Cellulomonas flavigena DSM 20109 chromosome, complete genomeputative type II DNA modification enzyme01010
NC_014934:219000:2213082213082245083201Cellulophaga algicola DSM 14237 chromosome, complete genomen-6 DNA methylase3e-1379
NC_015167:2663686:2672070267207026768244755Cellulophaga lytica DSM 7489 chromosome, complete genomeplasmid-like protein2e-1379.3
NC_014820:1517927:1527616152761615315873972Cenarchaeum symbiosum A, complete genometype II restriction enzyme, methylase subunit3e-34148
NC_013132:705314:7134517134517159312481Chitinophaga pinensis DSM 2588, complete genomehypothetical protein3e-24114
NC_010831:931961:9501289501289540003873Chlorobium phaeobacteroides BS1, complete genomehypothetical protein2e-94348
NC_008639:1462000:1480653148065314845013849Chlorobium phaeobacteroides DSM 266, complete genomehypothetical protein4e-95350
NC_004369:3082691:3091247309124730958214575Corynebacterium efficiens YS-314, complete genomehypothetical protein2e-1689.4
NC_015859:1898693:1918483191848319220853603Corynebacterium variabile DSM 44702 chromosome, complete genomehypothetical protein3e-0655.5
NC_011880:56543:7357773577778064230Cyanothece sp. PCC 7425 plasmid pP742501, complete sequencehypothetical protein3e-1998.6
NC_019757:1789237:1796916179691618000053090Cylindrospermum stagnale PCC 7417, complete genometype I restriction-modification system methyltransferase subunit4e-0861.6
NC_013890:191616:2058982058982092453348Dehalococcoides sp. GT chromosome, complete genomehypothetical protein7e-0860.8
NC_014365:2843126:2868884286888428729844101Desulfarculus baarsii DSM 2075 chromosome, complete genomehypothetical protein6e-29130
NC_013216:1442044:1450321145032114549944674Desulfotomaculum acetoxidans DSM 771, complete genomehypothetical protein1e-1587
NC_015573:2323268:2323268232326823273084041Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein0818
NC_011353:5426793:5450290545029054552244935Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-1380.1
NC_013008:5382917:5406351540635154112854935Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-1380.1
NC_013941:5192500:5214907521490752198414935Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-1380.1
NC_008278:6854759:6877269687726968820534785Frankia alni ACN14a, complete genomeputative Type II restriction enzyme, methylase subunit4e-1378.2
NC_008278:256427:2599032599032642224320Frankia alni ACN14a, complete genomeconserved hypothetical protein; putative N-6 Adenine-specific DNA methylase domain.2e-1689
NC_009921:8215996:8232858823285882369074050Frankia sp. EAN1pec, complete genomeconserved hypothetical protein3e-29131
NC_013757:3897413:3918472391847239231994728Geodermatophilus obscurus DSM 43160, complete genomehypothetical protein2e-1482.4
NC_005125:2887319:2904118290411829084464329Gloeobacter violaceus PCC 7421, complete genomehypothetical protein4e-27124
NC_006677:1596560:1654143165414316589754833Gluconobacter oxydans 621H, complete genomePutative type II DNA modification enzyme1e-172608
NC_013441:27877:3596535965399633999Gordonia bronchialis DSM 43247, complete genomehypothetical protein1e-35152
NC_013441:382597:3854153854153901364722Gordonia bronchialis DSM 43247, complete genometype II restriction enzyme, methylase subunit1e-1276.3
NC_018581:2768743:2814836281483628188914056Gordonia sp. KTR9 chromosome, complete genomeType II restriction enzyme, methylase subunits1e-19100
NC_007645:3934239:3942388394238839466324245Hahella chejuensis KCTC 2396, complete genomeType II restriction enzyme, methylase subunit0650
NC_013440:971717:9717179717179768465130Haliangium ochraceum DSM 14365, complete genomehypothetical protein8e-24113
NC_015510:3543352:3550469355046935551394671Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomehypothetical protein4e-98360
NC_013158:1686239:1703027170302717070584032Halorhabdus utahensis DSM 12940, complete genomerestriction/modification enzyme0668
NC_012028:451982:4610004610004648963897Halorubrum lacusprofundi ATCC 49239 chromosome 2, complete genomehypothetical protein1e-23113
NC_012030:345837:3835923835923868883297Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completehypothetical protein6e-28127
NC_012030:165071:1845441845441886714128Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completehypothetical protein2e-32142
NC_014830:3387479:3405417340541734095024086Intrasporangium calvum DSM 43043 chromosome, complete genomehypothetical protein7e-1997.4
NC_015588:1213873:1242115124211512470674953Isoptericola variabilis 225 chromosome, complete genomehypothetical protein4e-1274.7
NC_012731:600518:6340556340556380864032Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeATP phosphoribosyltransferase7e-24114
NC_009648:5119271:5147740514774051518104071Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeATP phosphoribosyltransferase1e-21106
NC_008740:1459747:1477293147729314825485256Marinobacter aquaeolei VT8, complete genomehypothetical protein5e-1377.8
NC_013946:415028:4218694218694261494281Meiothermus ruber DSM 1279 chromosome, complete genomehypothetical protein1e-22109
NC_008254:2496622:2504989250498925081053117Mesorhizobium sp. BNC1, complete genomeN-6 DNA methylase6e-0654.3
NC_012811:1105395:1108154110815411121433990Methylobacterium extorquens AM1 megaplasmid, complete sequenceputative type II DNA modification enzyme0694
NC_010172:280092:2957902957902997583969Methylobacterium extorquens PA1, complete genomeputative type II DNA modification enzyme0682
NC_015572:3091707:3104253310425331086954443Methylomonas methanica MC09 chromosome, complete genomehypothetical protein0689
NC_014391:1317957:1333936133393613374603525Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein9e-0653.5
NC_009338:3359500:3396675339667534002443570Mycobacterium gilvum PYR-GCK chromosome, complete genomeDNA methylase1e-0760.1
NC_015576:808926:8261128261128286612550Mycobacterium sp. JDM601 chromosome, complete genomehypothetical protein1e-1689.7
NC_015576:612164:6209636209636255584596Mycobacterium sp. JDM601 chromosome, complete genomeputative type II restriction enzyme methylase subunit3e-1688.6
NC_008705:868623:9010879010879051064020Mycobacterium sp. KMS, complete genomeconserved hypothetical protein2e-1895.5
NC_008146:861319:8923588923588963774020Mycobacterium sp. MCS, complete genomehypothetical protein2e-1895.5
NC_015711:3122000:3132062313206231360123951Myxococcus fulvus HW-1 chromosome, complete genometype II DNA modification enzyme0853
NC_020126:2979959:3002814300281430067433930Myxococcus stipitatus DSM 14675, complete genomehypothetical protein1e-24116
NC_013235:508585:5085855085855126284044Nakamurella multipartita DSM 44233, complete genomehypothetical protein4e-1998.2
NC_019962:2736815:2752702275270227566673966Natrinema pellirubrum DSM 15624, complete genometype I restriction-modification system methyltransferase subunit1e-20102
NC_019792:3219333:3227391322739132312453855Natronobacterium gregoryi SP2 chromosome, complete genomehypothetical protein2e-25119
NC_019792:153661:1605111605111647524242Natronobacterium gregoryi SP2 chromosome, complete genomeN-6 DNA Methylase/Eco57I restriction endonuclease4e-36154
NC_019974:1115553:1136317113631711405644248Natronococcus occultus SP4, complete genometype I restriction-modification system methyltransferase subunit6e-36154
NC_020388:252500:2734882734882770723585Natronomonas moolapensis 8.8.11 complete genomeprobable restriction/modification enzyme6e-1480.9
NC_007426:1840670:1871431187143118754594029Natronomonas pharaonis DSM 2160, complete genomeprobable restriction/modification enzyme1e-178628
NC_016887:1949927:1985531198553119891603630Nocardia cyriacigeorgica GUH-2, complete genomeDNA methylase2e-0656.2
NC_008697:55406:7324973249772443996Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceputative type II DNA modification enzyme0910
NC_014210:3248526:3256610325661032607014092Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,hypothetical protein3e-20102
NC_020156:2750000:2753388275338827566093222Nonlabens dokdonensis DSW-6, complete genometype II restriction enzyme, methylase6e-1480.9
NC_008686:1472899:1485429148542914898084380Paracoccus denitrificans PD1222 chromosome 1, complete sequencehypothetical protein0649
NC_017080:1981788:1992712199271219961883477Phycisphaera mikurensis NBRC 102666, complete genomerestriction endonuclease/modification methylase2e-0656.2
NC_002950:1511955:1545080154508015480883009Porphyromonas gingivalis W83, complete genometype I restriction-modification system, M subunit, putative4e-0861.6
NC_019968:1147409:1158767115876711629424176Prevotella dentalis DSM 3688 chromosome 2, complete sequencehypothetical protein1e-153545
NC_010554:2646806:2713633271363327186034971Proteus mirabilis HI4320, complete genomeplasmid-related protein1e-1380.1
NC_009434:3611738:3728588372858837334954908Pseudomonas stutzeri A1501, complete genometype II restriction enzyme, methylase subunit8e-1377
NC_012856:2815797:2815797281579728197173921Ralstonia pickettii 12D chromosome 1, complete genomeputative type II DNA modification enzyme0747
NC_014659:1731121:1742631174263117472204590Rhodococcus equi 103S, complete genomehypothetical protein9e-1790.5
NC_013222:1536203:1543931154393115469513021Robiginitalea biformata HTCC2501, complete genometype II restriction enzyme, methylase subunit2e-1482.4
NC_009142:5698100:5724174572417457278303657Saccharopolyspora erythraea NRRL 2338, complete genomeDNA methylase3e-0655.5
NC_013521:345308:3562673562673603104044Sanguibacter keddieii DSM 10542, complete genomehypothetical protein4e-1894.7
NC_003888:5790104:5801998580199858056003603Streptomyces coelicolor A3(2), complete genomeDNA methylase2e-0656.2
NC_003888:7337453:7353207735320773568393633Streptomyces coelicolor A3(2), complete genomehypothetical protein5e-0654.7
NC_013929:2375613:2419372241937224248975526Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein3e-1688.6
NC_013929:7278414:7288198728819872933725175Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-1585.5
NC_013929:1799594:1808943180894318129744032Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein0995
NC_015957:2755709:2762477276247727674294953Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative type II restriction enzyme, methylase subunit3e-1585.5
NC_013595:8603188:8626853862685386309294077Streptosporangium roseum DSM 43021, complete genomeputative type II DNA modification enzyme01187
NC_008554:484267:4926344926344960773444Syntrophobacter fumaroxidans MPOB, complete genomehypothetical protein8e-0963.9
NC_013510:2937530:2948060294806029521004041Thermomonospora curvata DSM 43183, complete genomehypothetical protein3e-1792
NC_013510:2288746:229847422984742298677204Thermomonospora curvata DSM 43183, complete genomehypothetical protein1e-0656.6
NC_017278:48630:7631176311803093999Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein0642
NC_005835:1773482:1780134178013417834993366Thermus thermophilus HB27, complete genomehypothetical protein9e-0757
NC_019902:2306961:2319086231908623241075022Thioalkalivibrio nitratireducens DSM 14787, complete genomeType II restriction enzyme, methylase subunit1e-1276.6
NC_015577:2081196:2092758209275820959043147Treponema azotonutricium ZAS-9 chromosome, complete genomeputative type IIS restriction enzyme R and M protein (ECO57IR)3e-1172.4
NC_008786:1298817:1303927130392713082854359Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein6e-25117
NC_015434:3755560:3768253376825337732895037Verrucosispora maris AB-18-032 chromosome, complete genomehypothetical protein2e-1482.4
NC_013530:2492312:2517212251721225213124101Xylanimonas cellulosilytica DSM 15894, complete genomehypothetical protein2e-1689.4