Pre_GI: BLASTP Hits

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Query: NC_007333:810381:834415 Thermobifida fusca YX, complete genome

Start: 834415, End: 835383, Length: 969

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014169:515957:523221523221524009789Bifidobacterium longum subsp. longum JDM301 chromosome, completeSMF family protein1e-33144
NC_014656:1161188:1172044117204411730601017Bifidobacterium longum subsp. longum BBMN68 chromosome, completesmf family protein2e-32140
NC_009495:2571732:2571732257173225728171086Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA protecting protein DprA9e-1891.3
NC_019908:1043401:1045622104562210467641143Brachyspira pilosicoli P43/6/78 chromosome, complete genomeDNA protecting protein DprA9e-1891.3
NC_018607:1865972:1865972186597218672101239Brachyspira pilosicoli B2904 chromosome, complete genomeDNA protecting protein DprA1e-1790.9
NC_014328:1379437:1396457139645713975571101Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative Smf protein1e-1790.5
NC_013216:1219775:1239497123949712405971101Desulfotomaculum acetoxidans DSM 771, complete genomeDNA protecting protein DprA1e-1584.3
NC_010730:578493:5826215826215836911071Sulfurihydrogenibium sp. YO3AOP1, complete genomeDNA protecting protein DprA1e-1584
NC_014960:1735786:1790547179054717916591113Anaerolinea thermophila UNI-1, complete genomeputative DNA processing protein1e-1480.9
NC_015573:997629:1014479101447910155881110Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA protecting protein DprA1e-1480.9
NC_014314:576465:6619486619486630361089Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeDNA protecting protein DprA3e-1376.3
NC_012440:197728:2123492123492134071059Persephonella marina EX-H1, complete genomeprotein smf (DNA-processing chain A)6e-1375.1
NC_010572:4181403:4190954419095441919821029Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein6e-1375.1
NC_009053:1942973:1942973194297319441271155Actinobacillus pleuropneumoniae L20, complete genomeProtein smf (DNA-processing chain A)7e-1375.1
NC_014377:1060000:1062283106228310633621080Thermosediminibacter oceani DSM 16646 chromosome, complete genomeDNA protecting protein DprA3e-1272.8
NC_014624:2297000:2320474232047423215801107Eubacterium limosum KIST612 chromosome, complete genomeDNA protecting protein DprA3e-1169.7
NC_010003:1360472:140726114072611408253993Petrotoga mobilis SJ95, complete genomeDNA protecting protein DprA5e-1168.6
NC_020291:1437431:1453854145385414549121059Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA protecting protein DprA9e-1167.8
NC_015565:1647554:1647554164755416486451092Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeDNA protecting protein DprA1e-1067.8
NC_017512:2116295:2135729213572921369161188Neisseria meningitidis WUE 2594, complete genomeSmf protein (DNA processing chain A)2e-1066.6
NC_017513:115870:1172381172381184251188Neisseria meningitidis G2136 chromosome, complete genomeputative DNA processing protein DprA2e-1066.6
NC_013016:2041890:2061326206132620625131188Neisseria meningitidis alpha14 chromosome, complete genomeDNA processing protein DprA2e-1066.6
NC_012438:159927:1645131645131655831071Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeDNA protecting protein DprA3e-1066.6
NC_004461:921364:925144925144926016873Staphylococcus epidermidis ATCC 12228, complete genomeDNA processing Smf protein6e-1065.5
NC_017294:758992:7621257621257632191095Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeDNA protecting protein DprA5e-1065.5
NC_009848:1542978:156300915630091563911903Bacillus pumilus SAFR-032, complete genomeSmf family DNA processing protein9e-1064.7
NC_017516:123618:1249861249861261791194Neisseria meningitidis H44/76 chromosome, complete genomeputative DNA processing protein DprA1e-0964.3
NC_010120:2055803:2075239207523920764261188Neisseria meningitidis 053442, complete genomeDNA processing chain A1e-0964.3
NC_008577:44184:4418444184452001017Shewanella sp. ANA-3 chromosome 1, complete sequenceDNA protecting protein DprA1e-0964.3
NC_017501:121902:1232701232701244571188Neisseria meningitidis 8013, complete genomeSmf protein (DNA processing chain A)2e-0963.9
NC_013199:1407742:142346114234611424276816Lactobacillus rhamnosus Lc 705, complete genomeDNA processing Smf protein / Rossmann fold nucleotide-binding protein for DNA uptake1e-0963.9
NC_013162:811763:8154028154028164961095Capnocytophaga ochracea DSM 7271, complete genomeDNA protecting protein DprA3e-0963.2
NC_016818:1605918:161583616158361616822987Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative Rossmann fold nucleotide-binding protein involved in DNA uptake4e-0962.4
NC_012471:1197534:119976711997671200612846Streptococcus equi subsp. equi 4047, complete genomeSMF family protein1e-0861.2
NC_014910:1734634:174680617468061747702897Alicycliphilus denitrificans BC chromosome, complete genomesmf family protein2e-0860.5
NC_012997:4545875:458510345851034585996894Teredinibacter turnerae T7901, complete genomeSMF protein3e-0859.7
NC_014721:434501:4426364426364437331098Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeDNA protecting protein dpra4e-0859.3
NC_006526:1202000:1218755121875512199121158Zymomonas mobilis subsp. mobilis ZM4, complete genomeDNA processing chain A4e-0858.9
NC_014171:3726054:373450037345003735369870Bacillus thuringiensis BMB171 chromosome, complete genomenucleotide-binding SMF protein4e-0858.9
CP002185:3627992:3645405364540536465291125Escherichia coli W, complete genomeDNA protecting protein DprA9e-0858.2
NC_011658:3603009:363857136385713639440870Bacillus cereus AH187 chromosome, complete genomeDNA processing Smf protein9e-0857.8
NC_003909:3606177:362592436259243626793870Bacillus cereus ATCC 10987, complete genomeDNA processing protein (smf family)1e-0757.8
NC_011969:3575988:358253135825313583400870Bacillus cereus Q1 chromosome, complete genomeDNA processing protein (smf family)1e-0757.8
NC_002695:4153394:4167448416744841685721125Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0757
NC_011601:846358:864090864090865049960Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-0757
NC_018145:147759:1477591477591489161158Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeDNA protecting protein DprA2e-0756.6
NC_011138:318168:325983325983326870888Alteromonas macleodii 'Deep ecotype', complete genomeSMF protein3e-0756.2
NC_014483:1973233:1995184199518419963711188Paenibacillus polymyxa E681 chromosome, complete genomeSmf protein6e-0755.1
NC_006511:3364448:3382067338206733831911125Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-0654.3
NC_015658:319296:327387327387328331945Halopiger xanaduensis SH-6 plasmid pHALXA01, complete sequenceSMF family protein1e-0654.3
NC_016810:2871689:287724528772452878222978Salmonella enterica subsp. enterica serovar Typhimurium strputative competence protein1e-0654.3
NC_016857:2871689:287724528772452878222978Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative competence protein1e-0654.3
NC_017046:2869873:287598728759872876964978Salmonella enterica subsp. enterica serovar Typhimurium str. 798competence protein1e-0654.3
NC_013939:1812259:1823583182358318247191137Deferribacter desulfuricans SSM1, complete genomeDNA processing protein A1e-0654.3
NC_008312:4555499:4555499455549945566411143Trichodesmium erythraeum IMS101, complete genomeDNA protecting protein DprA1e-0654.3
NC_014844:2056943:2061979206197920632981320Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeDNA protecting protein DprA2e-0653.9
NC_010410:3719599:3740583374058337417131131Acinetobacter baumannii AYE, complete genomeputative Rossmann-fold nucleotide-binding protein involved in DNA uptake (Smf)2e-0653.5
NC_010611:208268:2082682082682093981131Acinetobacter baumannii ACICU, complete genomepredicted Rossmann fold nucleotide-binding protein2e-0653.5
NC_007798:301456:3177673177673189031137Neorickettsia sennetsu str. Miyayama, complete genomeputative DNA processing protein DprA4e-0652.8
NC_011992:3615517:3632024363202436331841161Acidovorax ebreus TPSY, complete genomeDNA protecting protein DprA5e-0652