Pre_GI: BLASTP Hits

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Query: NC_007333:810381:828511 Thermobifida fusca YX, complete genome

Start: 828511, End: 830646, Length: 2136

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013926:1166454:1168343116834311710152673Aciduliprofundum boonei T469 chromosome, complete genomeDEAD/DEAH box helicase domain protein1e-45185
NC_019942:1211535:1211535121153512142072673Aciduliprofundum sp. MAR08-339, complete genomeLhr-like helicase2e-40167
NC_019942:1078837:1096394109639410979771584Aciduliprofundum sp. MAR08-339, complete genomeLhr-like helicase9e-32139
NC_009348:2034500:2053198205319820546011404Aeromonas salmonicida subsp. salmonicida A449, complete genomeATP-dependent RNA helicase RhlE2e-0655.1
NC_000854:1342983:1354540135454013572452706Aeropyrum pernix K1, complete genomeputative ATP-dependent helicase1e-26122
NC_014910:1200605:1216539121653912187432205Alicycliphilus denitrificans BC chromosome, complete genomedead/deah box helicase domain protein5e-41169
NC_011891:4450031:4476352447635244806114260Anaeromyxobacter dehalogenans 2CP-1, complete genomeDEAD/H associated domain protein3e-25117
NC_011891:2088134:2088134208813420927444611Anaeromyxobacter dehalogenans 2CP-1, complete genomeDEAD/H associated domain protein3e-1790.9
NC_011891:1278199:1298935129893513010402106Anaeromyxobacter dehalogenans 2CP-1, complete genomeDEAD/DEAH box helicase domain protein8e-89328
NC_013741:1390823:1408399140839914125114113Archaeoglobus profundus DSM 5631, complete genometranscriptional regulator, XRE family1e-1792.4
NC_015164:2078500:2078511207851120803311821Bacteroides salanitronis DSM 18170 chromosome, complete genomeATP-dependent DNA helicase RecQ3e-1171.2
NC_014638:1139824:1159636115963611621942559Bifidobacterium bifidum PRL2010 chromosome, complete genomehelicase3e-0654.3
NC_008391:404388:4208294208294253554527Burkholderia cepacia AMMD chromosome 2, complete sequenceDEAD/H associated domain protein1e-27125
NC_007952:3196085:3218882321888232211132232Burkholderia xenovorans LB400 chromosome 2, complete sequenceDEAD/DEAH box helicase2e-44181
NC_017096:779550:8001418001418023812241Caldisericum exile AZM16c01, complete genomeputative ATP-dependent helicase3e-1067.8
NC_013194:3861409:3869550386955038716852136Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeDEAD/DEAH box helicase domain protein6e-129461
NC_015391:448833:4622034622034634741272Carnobacterium sp. 17-4 chromosome, complete genomeATP-dependent RNA helicase RhlE1e-0758.9
NC_015167:2663686:2678734267873426850396306Cellulophaga lytica DSM 7489 chromosome, complete genomehypothetical protein3e-0654.3
NC_008639:2545107:2552272255227225544042133Chlorobium phaeobacteroides DSM 266, complete genomeDEAD/DEAH box helicase domain protein1e-56221
NC_010001:902506:9154059154059195504146Clostridium phytofermentans ISDg, complete genomeDEAD/DEAH box helicase domain protein2e-33144
NC_010001:1452167:1453274145327414551271854Clostridium phytofermentans ISDg, complete genomeATP-dependent DNA helicase RecQ5e-0963.5
NC_012590:850130:8675268675268724694944Corynebacterium aurimucosum ATCC 700975, complete genomeputative ATP-dependent DNA helicase2e-26121
NC_002935:781172:7993437993438041574815Corynebacterium diphtheriae NCTC 13129, complete genomePutative ATP-dependent helicase1e-29131
NC_004369:3082691:3082691308269130889936303Corynebacterium efficiens YS-314, complete genomehypothetical protein5e-0653.5
NC_003450:747000:7632347632347695366303Corynebacterium glutamicum ATCC 13032, complete genomeputative helicase4e-0653.9
NC_006958:748500:7647077647077710096303Corynebacterium glutamicum ATCC 13032, complete genomehelicase4e-0653.9
NC_007164:511171:5318585318585368524995Corynebacterium jeikeium K411, complete genomeputative ATP-dependent DNA helicase7e-2099.8
NC_007164:2261644:2283522228352222858762355Corynebacterium jeikeium K411, complete genomeputative helicase4e-1273.6
NC_015673:397947:4194264194264243844959Corynebacterium resistens DSM 45100 chromosome, complete genomeATP-dependent DNA helicase9e-21102
NC_015683:732668:7463117463117513205010Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein1e-28128
NC_015723:1998363:1998363199836320010502688Cupriavidus necator N-1 chromosome 2, complete sequenceDNA ligase Lig1e-1689
NC_012526:765000:7805097805097855605052Deinococcus deserti VCD115, complete genomeputative ATP-dependent DNA helicase3e-0654.3
NC_010002:5691968:5700427570042757026492223Delftia acidovorans SPH-1, complete genomeDEAD/DEAH box helicase domain protein2e-38161
NC_007907:761486:7848037848037869652163Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-47191
NC_021184:2936244:2936244293624429407404497Desulfotomaculum gibsoniae DSM 7213, complete genomeLhr-like helicase3e-28127
NC_013204:2826500:2870201287020128717271527Eggerthella lenta DSM 2243, complete genomeDEAD/DEAH box helicase domain protein2e-0861.6
NC_004547:1837500:1842241184224118470374797Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeprobable ATP-dependent helicase1e-29132
NC_013410:1255359:1275449127544912769091461Fibrobacter succinogenes subsp. succinogenes S85 chromosome,DEAD/DEAH box helicase4e-0653.9
NC_016510:2991687:2991687299168729938822196Flavobacterium columnare ATCC 49512 chromosome, complete genomeATP-dependent DNA helicase RecQ15e-0963.5
NC_009921:8147947:8168399816839981720913693Frankia sp. EAN1pec, complete genomeDEAD/DEAH box helicase domain protein1e-0655.8
NC_012489:4336790:4378213437821343799971785Gemmatimonas aurantiaca T-27, complete genomeATP-dependent DEAD-box RNA helicase DeaD2e-1378.2
NC_012918:1444333:1456652145665214588832232Geobacter sp. M21 chromosome, complete genomeDEAD/DEAH box helicase9e-47189
NC_013757:3897413:3912101391210139184756375Geodermatophilus obscurus DSM 43160, complete genomeProtein of unknown function DUF19986e-0756.6
NC_016906:181254:1876541876541912293576Gordonia polyisoprenivorans VH2 chromosome, complete genomeDEAD/DEAH box helicase6e-0653.5
NC_007645:3581114:3587257358725735893562100Hahella chejuensis KCTC 2396, complete genomeLhr-like helicase8e-149528
NC_013440:1624561:1625910162591016286872778Haliangium ochraceum DSM 14365, complete genome3'-5' exonuclease5e-94345
NC_013440:811780:8131298131298159062778Haliangium ochraceum DSM 14365, complete genome3'-5' exonuclease2e-94347
NC_013440:1580802:1580802158080215829372136Haliangium ochraceum DSM 14365, complete genomeDEAD/DEAH box helicase domain protein4e-90332
NC_013967:1590500:1614465161446516168162352Haloferax volcanii DS2 chromosome, complete genomeATP-dependent helicase9e-1685.9
NC_013158:2303000:2319032231903223214012370Halorhabdus utahensis DSM 12940, complete genomeDEAD/DEAH box helicase domain protein4e-1273.9
NC_015557:215397:2553502553502564441095Hydrogenobaculum sp. 3684 chromosome, complete genomeDEAD/DEAH box helicase domain protein7e-0963.2
NC_020411:215432:2553832553832564771095Hydrogenobaculum sp. HO, complete genomeDEAD/DEAH box helicase domain protein7e-0963.2
NC_015587:215433:2553862553862564801095Hydrogenobaculum sp. SHO chromosome, complete genomeDEAD/DEAH box helicase domain protein7e-0963.2
NC_009776:157311:1651041651041679352832Ignicoccus hospitalis KIN4/I, complete genomeDEAD/DEAH box helicase domain protein1e-48195
NC_015588:1213873:1235585123558512421186534Isoptericola variabilis 225 chromosome, complete genomeDEAD/DEAH box helicase domain protein4e-0653.9
NC_013174:1366786:1379902137990213827542853Jonesia denitrificans DSM 20603, complete genomeDEAD/DEAH box helicase domain protein9e-0756.2
NC_016612:28451:4061740617428152199Klebsiella oxytoca KCTC 1686 chromosome, complete genomeATP-dependent helicase2e-40167
NC_013169:1845735:1845735184573518507174983Kytococcus sedentarius DSM 20547, complete genomeATP dependent helicase, Lhr family3e-1584.3
NC_008740:1484531:1486170148617014928116642Marinobacter aquaeolei VT8, complete genomeDEAD/DEAH box helicase domain protein1e-0655.8
NC_014923:1249267:1250028125002812518691842Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP-dependent DNA helicase RecQ2e-0758.2
NC_009515:474285:4742854742854768852601Methanobrevibacter smithii ATCC 35061, complete genomeATP-dependent helicase6e-30133
NC_013887:17160:3427134271363582088Methanocaldococcus sp. FS406-22 chromosome, complete genomeDEAD/DEAH box helicase domain protein4e-0653.9
NC_013665:1591081:1613908161390816182004293Methanocella paludicola SANAE, complete genomehypothetical protein6e-0756.6
NC_007955:742834:7620857620857649192835Methanococcoides burtonii DSM 6242, complete genomeDEAD/DEAH box helicase-like protein2e-37157
NC_009635:94937:9493794937987343798Methanococcus aeolicus Nankai-3 chromosome, complete genomeDEAD/DEAH box helicase4e-1170.5
NC_014507:982000:9821929821929848792688Methanoplanus petrolearius DSM 11571 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein1e-42175
NC_003551:793046:7945607945607970162457Methanopyrus kandleri AV19, complete genomeArchaea-specific Superfamily II helicase1e-0758.9
NC_014408:806720:8132608132608157372478Methanothermobacter marburgensis str. Marburg chromosome, completehelicase3e-0654.7
NC_014408:682689:6826896826896848212133Methanothermobacter marburgensis str. Marburg chromosome, completeATP-dependent helicase1e-68261
NC_015562:1230532:1246389124638912505134125Methanotorris igneus Kol 5 chromosome, complete genomeDEAD/H associated domain-containing protein2e-1378.2
NC_015562:1708000:1720253172025317226582406Methanotorris igneus Kol 5 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein2e-0654.7
NC_012803:361127:3561023561023611305029Micrococcus luteus NCTC 2665, complete genome9e-27122
NC_009338:3359500:3386977338697733890672091Mycobacterium gilvum PYR-GCK chromosome, complete genomeDEAD/DEAH box helicase0688
NC_015576:612164:6263136263136325856273Mycobacterium sp. JDM601 chromosome, complete genomehelicase superfamily protein6e-0653.5
NC_008095:7499255:7518954751895475215362583Myxococcus xanthus DK 1622, complete genomeATP-dependent helicase, DEAD/DEAH box family2e-1998.6
NC_019962:3577846:3581488358148835835542067Natrinema pellirubrum DSM 15624, complete genomeDNA/RNA helicase, superfamily II2e-0655.1
NC_019792:3219333:3239661323966132425012841Natronobacterium gregoryi SP2 chromosome, complete genomeLhr-like helicase2e-34148
NC_013016:1289975:1312991131299113143641374Neisseria meningitidis alpha14 chromosome, complete genomeputative ATP-dependent RNA helicase3e-0654.3
NC_017512:1294970:1318231131823113196041374Neisseria meningitidis WUE 2594, complete genomeputative ATP-dependent RNA helicase7e-0653.1
NC_003116:1518110:1540105154010515414781374Neisseria meningitidis Z2491, complete genomeATP-dependent RNA helicase7e-0653.1
NC_018681:7692560:7709079770907977109501872Nocardia brasiliensis ATCC 700358 chromosome, complete genomeATP-dependent DNA helicase1e-0965.5
NC_016887:1949927:1974963197496319770952133Nocardia cyriacigeorgica GUH-2, complete genomeputative ATP-dependent helicase0795
NC_015580:3834244:3852717385271738541981482Novosphingobium sp. PP1Y, complete genomeATP-dependent RNA helicase RhlE4e-0860.5
NC_015580:1584078:1597259159725915994332175Novosphingobium sp. PP1Y, complete genomeATP-dependent helicase Lhr and Lhr-like helicase3e-42173
NC_015690:8614000:8622843862284386241111269Paenibacillus mucilaginosus KNP414 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein6e-0963.5
NC_012440:423217:4245494245494269992451Persephonella marina EX-H1, complete genomeATP-dependent rna helicase, dead/deah box family2e-20101
NC_006370:1810842:1829710182971018319082199Photobacterium profundum SS9 chromosome 1, complete sequencehypothetical ATP-dependent helicase2e-36154
NC_014148:3959960:3979304397930439814242121Planctomyces limnophilus DSM 3776 chromosome, complete genomeDEAD/DEAH box helicase domain protein9e-98358
NC_008757:151862:1707931707931728202028Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completeDEAD/DEAH box helicase domain protein5e-132472
NC_009656:4527457:4563274456327445654962223Pseudomonas aeruginosa PA7 chromosome, complete genomeDEAD/DEAH box helicase7e-42172
NC_008463:2467219:2489403248940324916132211Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative helicase4e-43176
NC_020829:1840281:1869188186918818705101323Pseudomonas denitrificans ATCC 13867, complete genomeATP-dependent RNA helicase6e-0963.2
NC_009439:3770282:3781365378136537835812217Pseudomonas mendocina ymp, complete genomeDEAD/DEAH box helicase domain-containing protein4e-47189
NC_009512:1518113:1547914154791415492751362Pseudomonas putida F1, complete genomeDEAD/DEAH box helicase domain protein3e-1480.9
NC_009434:3611738:3745515374551537477342220Pseudomonas stutzeri A1501, complete genomeATP-dependent helicase3e-47190
NC_016147:3349272:3363478336347833660302553Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeDistinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster1e-1688.6
NC_016885:417661:4255244255244288113288Pyrobaculum oguniense TE7 chromosome, complete genomedistinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster6e-0653.1
NC_000868:834872:8474058474058495522148Pyrococcus abyssi GE5, complete genomeski2-like helicase8e-0756.2
NC_000868:757823:7769427769427796802739Pyrococcus abyssi GE5, complete genomelarge helicase-related protein9e-37155
NC_000961:888000:9107299107299133502622Pyrococcus horikoshii OT3, complete genomehelicase1e-1275.9
NC_015680:663341:6893096893096914472139Pyrococcus yayanosii CH1 chromosome, complete genomeski2-like helicase1e-0655.8
NC_017047:2042346:2051482205148220536802199Rahnella aquatilis HX2 chromosome, complete genomeDEAD/DEAH box helicase1e-41171
NC_007493:1929000:1939988193998819421592172Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceATP-dependent helicase3e-39164
NC_014659:1731121:1733926173392617403156390Rhodococcus equi 103S, complete genomeDEAD/DEAH box helicase6e-0653.5
NC_008435:2658986:2690170269017026924222253Rhodopseudomonas palustris BisA53, complete genomeDEAD/DEAH box helicase domain protein1e-51205
NC_017075:1869326:1869326186932618715332208Rubrivivax gelatinosus IL144, complete genomeputative ATP-dependent helicase2e-33144
NC_017075:4421486:4422895442289544243521458Rubrivivax gelatinosus IL144, complete genomeATP-dependent RNA helicase RhlE8e-0859.7
NC_013159:502928:5287135287135308212109Saccharomonospora viridis DSM 43017, complete genomeLhr-like helicase0775
NC_009142:5698100:5714083571408357163772295Saccharopolyspora erythraea NRRL 2338, complete genomeputative ATP-dependent helicase0828
NC_009901:3563264:3579604357960435810101407Shewanella pealeana ATCC 700345, complete genomeDEAD/DEAH box helicase domain protein7e-0756.6
NC_009831:2884851:2911328291132829127161389Shewanella sediminis HAW-EB3, complete genomeDEAD/DEAH box helicase domain protein6e-0653.5
NC_008536:3601841:3602640360264036072054566Solibacter usitatus Ellin6076, complete genomeDEAD/H associated domain protein1e-26122
NC_014217:2020737:2030412203041220326552244Starkeya novella DSM 506 chromosome, complete genomeDEAD/DEAH box helicase domain protein1e-38162
NC_003888:7337453:7374208737420873764032196Streptomyces coelicolor A3(2), complete genomeATP-dependent helicase0792
NC_010572:1872840:1898715189871519008532139Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative ATP-dependent helicase0804
NC_017275:1189162:1214566121456612173612796Sulfolobus islandicus HVE10/4 chromosome, complete genomeDEAD/DEAH box helicase4e-37157
NC_008319:1306482:1316964131696413194142451Synechococcus sp. CC9311, complete genomeATP-dependent helicase, DEAD/DEAH box family protein5e-1996.7
NC_007513:987969:1002947100294710054212475Synechococcus sp. CC9902, complete genomeDEAD/DEAH box helicase-like2e-20101
NC_009482:1652329:1665788166578816685682781Synechococcus sp. RCC307 chromosome, complete genomesuperfamily II RNA helicase8e-0652.8
NC_017052:3474500:3490518349051834935383021Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeantiviral protein1e-0758.9
NC_017039:3474500:3490529349052934935493021Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeantiviral protein1e-0758.9
NC_017277:3475500:3491518349151834945383021Synechocystis sp. PCC 6803, complete genomeantiviral protein1e-0758.9
NC_000911:3478000:3493885349388534969053021Synechocystis sp. PCC 6803, complete genomeantiviral protein1e-0758.9
NC_015172:1120000:1135603113560311367511149Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeDEAD/DEAH box helicase domain protein1e-0655.8
NC_015172:850802:8538618538618560262166Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeDEAD/DEAH box helicase domain protein4e-47190
NC_007333:39579:7194471944741542211Thermobifida fusca YX, complete genomehelicase, C-terminal:DEAD/DEAH box helicase, N-terminal5e-39163
NC_006624:873525:8879228879228906992778Thermococcus kodakarensis KOD1, complete genomelarge helicase-related protein1e-35152
NC_012883:1283529:1301281130128113040312751Thermococcus sibiricus MM 739, complete genomeLarge helicase-related protein2e-41171
NC_008698:435885:4504834504834527022220Thermofilum pendens Hrk 5, complete genomeDEAD/DEAH box helicase domain protein4e-0757.4
NC_017954:301562:3015623015623043512790Thermogladius cellulolyticus 1633 chromosome, complete genomeDEAD/DEAH box helicase1e-29131
NC_013510:1703464:1711029171102917131132085Thermomonospora curvata DSM 43183, complete genomeDEAD/DEAH box helicase domain protein0723
NC_010525:1314999:1335599133559913384122814Thermoproteus neutrophilus V24Sta, complete genomeDEAD/DEAH box helicase domain protein5e-38159
NC_010525:1177154:1192683119268311954212739Thermoproteus neutrophilus V24Sta, complete genomeDEAD/DEAH box helicase domain protein1e-35152
NC_016070:719791:7365697365697393162748Thermoproteus tenax Kra 1, complete genomeATP-dependent helicase1e-44181
NC_014160:801618:8016188016188044252808Thermosphaera aggregans DSM 11486 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein5e-30133
NC_012691:1144715:1150721115072111519711251Tolumonas auensis DSM 9187, complete genomeDEAD/DEAH box helicase domain protein1e-0965.9
NC_008312:5637974:5655409565540956581262718Trichodesmium erythraeum IMS101, complete genomeDEAD/DEAH box helicase-like6e-1789.7
NC_014537:603564:6331606331606360602901Vulcanisaeta distributa DSM 14429 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein5e-37156
NC_015151:1427965:1488726148872614915662841Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeDEAD/DEAH box helicase7e-37155
NC_006833:902744:9192989192989205241227Wolbachia endosymbiont strain TRS of Brugia malayi, completeSuperfamily II DNA/RNA helicase1e-0759.3
NC_016010:1822212:1842738184273818446961959Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeLhr-like helicase2e-30135
NC_016010:65949:6594965949684442496Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeDistinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster2e-1688.2
NC_010688:69458:6945869458719772520Xanthomonas campestris pv. campestris, complete genomeputative ATP-dependent helicase7e-1789.7
NC_017271:64293:6429364293667882496Xanthomonas campestris pv. raphani 756C chromosome, completehypothetical protein5e-1790.1
NC_007508:2941889:2959960295996029643544395Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeATP-dependent DNA helicase Lhr1e-33145
NC_007508:64955:6641566415689102496Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative helicase3e-1687.8