Pre_GI: BLASTP Hits

Some Help

Query: NC_007333:537292:549423 Thermobifida fusca YX, complete genome

Start: 549423, End: 549740, Length: 318

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018524:3075000:308271230827123082978267Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory s, gntR family protein2e-22104
NC_013510:5499447:551960755196075520026420Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family9e-1268.9
NC_014210:618500:632615632615632881267Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family3e-1063.5
NC_013729:2258582:227234522723452272686342Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family1e-0962
NC_014815:841484:883337883337883576240Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family2e-0961.2
NC_009953:1799416:180887218088721809129258Salinispora arenicola CNS-205 chromosome, complete genomeGntR family transcriptional regulator4e-0960.1
NC_021177:4221309:423668742366874237553867Streptomyces fulvissimus DSM 40593, complete genomeGntR-family transcriptional regulator6e-0959.7
NC_016947:666627:675648675648676442795Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein7e-0959.3
NC_010572:3925803:393580339358033936576774Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative GntR-family transcriptional regulator7e-0959.3
NC_017093:2129450:213507721350772135481405Actinoplanes missouriensis 431, complete genomeGntR family transcriptional regulator8e-0958.9
NC_007644:1352794:135596513559651356696732Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, GntR family1e-0858.5
NC_011899:1603500:1607699160769916088051107Halothermothrix orenii H 168, complete genomeregulatory protein GntR HTH3e-0857.4
NC_018515:1406816:142889914288991429282384Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator5e-0856.6
NC_015573:2463123:248842024884202489151732Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain9e-0855.8
NC_020133:5485528:549970854997085500487780Mycobacterium liflandii 128FXT, complete genomeregulatory protein1e-0755.5
NC_014165:92500:104440104440104859420Thermobispora bispora DSM 43833 chromosome, complete genomeGntR family transcriptional regulator1e-0755.1
NC_015953:2603526:261081926108192611727909Streptomyces sp. SirexAA-E chromosome, complete genomeGntR family transcriptional regulator1e-0755.1
NC_016109:785819:803804803804804082279Kitasatospora setae KM-6054, complete genomeGntR family transcriptional regulator2e-0754.7
NC_018750:4333064:433993843399384340732795Streptomyces venezuelae ATCC 10712, complete genomeputative regulatory protein KorSA, GntR-family transcriptional regulator2e-0754.7
NC_013929:1799594:181752518175251817767243Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein2e-0754.7
NC_014363:1605349:161115216111521611877726Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, GntR family3e-0754.3
NC_013595:702482:714904714904715620717Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family2e-0754.3
NC_016025:552000:562281562281562991711Candidatus Chloracidobacterium thermophilum B chromosome chromosometranscriptional regulator2e-0754.3
NC_015957:1070500:107590210759021076678777Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator2e-0754.3
NC_013093:1213908:123094312309431231323381Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, GntR family3e-0753.9
NC_013204:2826500:282801928280192828498480Eggerthella lenta DSM 2243, complete genometranscriptional regulator, GntR family3e-0753.9
NC_016582:5393568:540514154051415405914774Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator3e-0753.9
NC_011593:2014787:202250120225012022875375Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,regulatory protein GntR3e-0753.9
NC_017219:2014605:202231920223192022693375Bifidobacterium longum subsp. infantis ATCC 15697, complete genometranscriptional regulator3e-0753.9
NC_014210:144036:153050153050153823774Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family3e-0753.9
NC_016948:678939:688007688007688786780Mycobacterium intracellulare MOTT-64 chromosome, complete genometranscriptional regulator4e-0753.5
NC_019897:329945:376575376575376955381Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator4e-0753.5
NC_019673:1420198:143062914306291431012384Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein4e-0753.5
NC_014246:676570:690222690222690977756Mobiluncus curtisii ATCC 43063 chromosome, complete genomeGntR family transcriptional regulator4e-0753.5
NC_003888:6103534:610846661084666108660195Streptomyces coelicolor A3(2), complete genometranscriptional regulator7e-0752.8
NC_004193:375416:394239394239394949711Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator8e-0752.4
NC_014666:7152782:716610971661097166882774Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, GntR family8e-0752.4
NC_003155:4592000:462092046209204621708789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator9e-0752.4
NC_003155:4592000:460272746027274603485759Streptomyces avermitilis MA-4680, complete genomeGntR-family transcriptional regulator1e-0652.4
NC_014815:5888934:590554959055495906340792Micromonospora sp. L5 chromosome, complete genometranscriptional regulator, gntr family1e-0652
NC_017093:2357583:236657423665742367317744Actinoplanes missouriensis 431, complete genomeGntR family transcriptional regulator1e-0652
NC_015563:4773415:478062647806264781414789Delftia sp. Cs1-4 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain2e-0651.6
NC_015434:228912:238390238390238791402Verrucosispora maris AB-18-032 chromosome, complete genomeGntR family transcriptional regulator2e-0651.2
NC_013510:5499447:552018155201815520483303Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family2e-0651.2
NC_013729:2157785:217111721711172171860744Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family2e-0651.2
NC_020911:1353896:1364156136415613655561401Octadecabacter antarcticus 307, complete genomeGntR family transcriptional regulator2e-0651.2
NC_014165:374674:384873384873385190318Thermobispora bispora DSM 43833 chromosome, complete genomeGntR family transcriptional regulator2e-0651.2
NC_003155:4906639:491297149129714913759789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator2e-0651.2
NC_013093:7437033:745068174506817451064384Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, GntR family2e-0651.2
NC_013929:5248000:526121052612105261998789Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator2e-0650.8
NC_018750:3249756:325719232571923257971780Streptomyces venezuelae ATCC 10712, complete genomeGntR-family transcriptional regulator3e-0650.8
NC_013729:380312:391510391510392364855Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family3e-0650.8
NC_013510:5499447:551930455193045519582279Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family4e-0650.1
NC_013282:551219:5826725826725841591488Cronobacter turicensis, complete genomeUncharacterized HTH-type transcriptional regulator yjiR5e-0649.7
NC_020829:5382500:5383064538306453845121449Pseudomonas denitrificans ATCC 13867, complete genomeGntR family transcriptional regulator5e-0649.7