Pre_GI: BLASTP Hits

Some Help

Query: NC_007333:1:6111 Thermobifida fusca YX, complete genome

Start: 6111, End: 6632, Length: 522

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007333:3626510:611161116632522Thermobifida fusca YX, complete genomehypothetical protein2e-79294
NC_014210:5752651:696069607313354Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein of unknown function DUF7219e-32135
NC_013510:1:644464446983540Thermomonospora curvata DSM 43183, complete genomeprotein of unknown function DUF7212e-27121
NC_013595:10329633:704770477667621Streptosporangium roseum DSM 43021, complete genomeZn-ribbon-containing possibly RNA-binding protein and truncated derivatives-like protein1e-25115
NC_015953:3684065:368650336865033687063561Streptomyces sp. SirexAA-E chromosome, complete genomehypothetical protein6e-23106
NC_018750:3964784:396707839670783967641564Streptomyces venezuelae ATCC 10712, complete genomepossible RNA-binding protein6e-23106
NC_003888:4251867:426587342658734266445573Streptomyces coelicolor A3(2), complete genomehypothetical protein5e-2097.1
NC_014830:4012999:639963996932534Intrasporangium calvum DSM 43043 chromosome, complete genomeprotein of unknown function DUF7211e-1892.8
NC_013521:4240468:571557156305591Sanguibacter keddieii DSM 10542, complete genomepredicted RNA-binding protein containing Zn ribbon3e-1891.3
NC_014318:3691:596759676470504Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein1e-1582.4
NC_017186:3694:596759676470504Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein1e-1582.4
NC_002677:1:443544355004570Mycobacterium leprae TN, complete genomehypothetical protein5e-1580.5
NC_011896:1:443544355004570Mycobacterium leprae Br4923, complete genomehypothetical protein5e-1580.5
NC_011896:3252925:443544355004570Mycobacterium leprae Br4923, complete genomehypothetical protein5e-1580.5
NC_002677:3253057:443544355004570Mycobacterium leprae TN, complete genomehypothetical protein5e-1580.5
NC_014550:3839389:459845985155558Arthrobacter arilaitensis Re117, complete genomehypothetical protein7e-1580.1
NC_008578:2431074:420242024696495Acidothermus cellulolyticus 11B, complete genomeprotein of unknown function DUF7219e-1579.7
NC_012803:3691:489848985461564Micrococcus luteus NCTC 2665, complete genomepredicted RNA-binding protein containing Zn ribbon3e-1478.2
NC_008541:4679022:526352635820558Arthrobacter sp. FB24 chromosome 1, complete sequenceprotein of unknown function DUF7213e-1477.8
NC_015312:1:531153115907597Pseudonocardia dioxanivorans CB1190 chromosome, complete genomehypothetical protein4e-1477.4
NC_011886:4376261:548254826039558Arthrobacter chlorophenolicus A6, complete genomeprotein of unknown function DUF7211e-1376.3
NC_006085:2544421:538953895997609Propionibacterium acnes KPA171202, complete genomehypothetical protein1e-1375.5
NC_014039:2479500:540054005993594Propionibacterium acnes SK137 chromosome, complete genomehypothetical protein2e-1375.5
NC_007164:2446879:486348635390528Corynebacterium jeikeium K411, complete genomehypothetical protein5e-1373.9
NC_014151:4106624:577957796402624Cellulomonas flavigena DSM 20109 chromosome, complete genomeprotein of unknown function DUF7216e-1373.6
NC_015564:4727630:481548155312498Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomehypothetical protein6e-1373.6
NC_008711:4579997:531853185872555Arthrobacter aurescens TC1, complete genomeputative protein of unknown function (DUF721)5e-1373.6
NC_015673:1:496549655504540Corynebacterium resistens DSM 45100 chromosome, complete genomehypothetical protein1e-1169.3
NC_013093:1:603160316462432Actinosynnema mirum DSM 43827, complete genomeprotein of unknown function DUF7212e-1168.6
NC_015145:4232283:570157016261561Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeRNA-binding protein containing Zn ribbon1e-1066.2
NC_014218:4424:442444245008585Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeprotein of unknown function DUF7217e-1063.2
NC_006087:1:531453145790477Leifsonia xyli subsp. xyli str. CTCB07, complete genomehypothetical protein1e-0859.3
NC_010572:8493946:850739285073928508267876Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative Tra3-like protein2e-0858.9
NC_010572:33724:376633766338538876Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative Tra3-like protein2e-0858.9
NC_015125:1597600:159975215997521600240489Microbacterium testaceum StLB037, complete genomeZn-ribbon-containing, possibly RNA-binding protein and truncated derivatives1e-0756.2
NC_010816:1660066:166233716623371662807471Bifidobacterium longum DJO10A, complete genomeZn-ribbon-containing RNA-binding protein4e-0754.3
NC_014656:1634397:163666816366681637138471Bifidobacterium longum subsp. longum BBMN68 chromosome, completezn-ribbon-containing RNA-binding protein5e-0753.9
NC_015067:2371428:462646265096471Bifidobacterium longum subsp. longum JCM 1217, complete genomehypothetical protein5e-0753.9
NC_004307:1620500:162067016206701621140471Bifidobacterium longum NCC2705, complete genomehypothetical protein similar to orf 192 of M. smegmatis6e-0753.5
NC_017221:2268276:226827622682762268746471Bifidobacterium longum subsp. longum KACC 91563 chromosome,hypothetical protein6e-0753.5
NC_015052:2383865:462646265096471Bifidobacterium longum subsp. infantis 157F, complete genomehypothetical protein6e-0753.5