Pre_GI: BLASTP Hits

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Query: NC_007333:1:4988 Thermobifida fusca YX, complete genome

Start: 4988, End: 6121, Length: 1134

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007333:3626510:4988498861211134Thermobifida fusca YX, complete genomerecombination protein F0645
NC_014210:5752651:5627562767601134Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,DNA replication and repair protein RecF5e-115414
NC_003888:4251867:4266442426644242675631122Streptomyces coelicolor A3(2), complete genomerecombination protein F2e-113409
NC_015953:3684065:3687060368706036881901131Streptomyces sp. SirexAA-E chromosome, complete genomeDNA replication and repair protein RecF4e-113408
NC_013929:5135285:5135285513528551364091125Streptomyces scabiei 87.22 chromosome, complete genomeDNA replication protein6e-112404
NC_018750:3964784:3967638396763839687591122Streptomyces venezuelae ATCC 10712, complete genomeDNA recombination and repair protein RecF3e-111402
NC_013595:10329633:5885588570571173Streptosporangium roseum DSM 43021, complete genomeRecombinational DNA repair ATPase (RecF pathway)- like protein5e-105381
NC_013093:1:4728472858431116Actinosynnema mirum DSM 43827, complete genomeDNA replication and repair protein RecF2e-97355
NC_013510:1:5315531564541140Thermomonospora curvata DSM 43183, complete genomeDNA replication and repair protein RecF1e-96353
NC_015312:1:4026402651681143Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeDNA replication and repair protein recF2e-93342
NC_017186:3694:4592459257461155Amycolatopsis mediterranei S699 chromosome, complete genomerecombination protein F3e-93342
NC_014318:3691:4592459257461155Amycolatopsis mediterranei U32 chromosome, complete genomeDNA replication and repair protein RecF3e-93342
NC_013521:4240468:4478447857221245Sanguibacter keddieii DSM 10542, complete genomeDNA replication and repair protein RecF1e-89330
NC_011886:4376261:4290429054981209Arthrobacter chlorophenolicus A6, complete genomeDNA replication and repair protein RecF2e-88326
NC_014151:4106624:4593459357891197Cellulomonas flavigena DSM 20109 chromosome, complete genomeDNA replication and repair protein RecF9e-88323
NC_015145:4232283:4506450657171212Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeDNA replication and repair protein RecF7e-87321
NC_015564:4727630:3572357247651194Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomeDNA replication and repair protein recF2e-86319
NC_014830:4012999:5015501562891275Intrasporangium calvum DSM 43043 chromosome, complete genomeDNA replication and repair protein RecF4e-84311
NC_008711:4579997:4132413253311200Arthrobacter aurescens TC1, complete genomeputative DNA replication and repair protein RecF1e-83310
NC_008541:4679022:4061406152661206Arthrobacter sp. FB24 chromosome 1, complete sequenceDNA replication and repair protein RecF5e-83308
NC_011896:1:3281328144381158Mycobacterium leprae Br4923, complete genomeputative DNA replication and SOS induction protein3e-79295
NC_011896:3252925:3281328144381158Mycobacterium leprae Br4923, complete genomeputative DNA replication and SOS induction protein3e-79295
NC_002677:3253057:3281328144381158Mycobacterium leprae TN, complete genomerecombination protein F3e-79295
NC_002677:1:3281328144381158Mycobacterium leprae TN, complete genomerecombination protein F3e-79295
NC_006085:2544421:4227422754111185Propionibacterium acnes KPA171202, complete genomerecombination protein F5e-79295
NC_014039:2479500:4202420254071206Propionibacterium acnes SK137 chromosome, complete genomeDNA recombination and repair protein RecF4e-78291
NC_014550:3839389:3442344246051164Arthrobacter arilaitensis Re117, complete genomeDNA replication and repair protein RecF6e-76285
NC_014218:4424:3195319544271233Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeDNA replication and repair protein RecF5e-76285
NC_008578:2431074:3097309742121116Acidothermus cellulolyticus 11B, complete genomeDNA replication and repair protein RecF3e-74279
NC_007164:2446879:3596359648731278Corynebacterium jeikeium K411, complete genomeDNA replication and repair protein RecF1e-71270
NC_006087:1:4160416053171158Leifsonia xyli subsp. xyli str. CTCB07, complete genomerecombination protein F9e-69260
NC_015673:1:3542354249721431Corynebacterium resistens DSM 45100 chromosome, complete genomeDNA replication and repair protein1e-68260
NC_012803:3691:3691369149051215Micrococcus luteus NCTC 2665, complete genomeDNA replication and repair protein RecF3e-64246
NC_015052:2383865:3391339146291239Bifidobacterium longum subsp. infantis 157F, complete genomerecombination protein RecF5e-49195
NC_014656:1634397:1637135163713516383731239Bifidobacterium longum subsp. longum BBMN68 chromosome, completerecf5e-49195
NC_017221:2268276:2268743226874322699811239Bifidobacterium longum subsp. longum KACC 91563 chromosome,recombination protein RecF5e-49195
NC_004307:1620500:1621137162113716223241188Bifidobacterium longum NCC2705, complete genomerecombination protein RecF3e-44179
NC_015067:2371428:3442344246291188Bifidobacterium longum subsp. longum JCM 1217, complete genomerecombination protein RecF3e-44179
NC_010816:1660066:1662804166280416639911188Bifidobacterium longum DJO10A, complete genomeRecombinational DNA repair ATPase3e-44179
NC_017208:1:3300330044271128Bacillus thuringiensis serovar chinensis CT-43 chromosome, completerecombination protein F7e-43174
NC_014171:1:3300330044271128Bacillus thuringiensis BMB171 chromosome, complete genomerecombination protein F1e-42174
NC_018664:1:3163316342841122Clostridium acidurici 9a chromosome, complete genomeDNA replication and repair protein RecF1e-42173
NC_009922:1:3236323643331098Alkaliphilus oremlandii OhILAs, complete genomeDNA replication and repair protein RecF1e-41171
NC_014152:1:3018301841241107Thermincola sp. JR, complete genomeDNA replication and repair protein RecF6e-42171
NC_004557:32094:4842548425495371113Clostridium tetani E88, complete genomerecombination protein F5e-42171
NC_015690:8645500:2964296440701107Paenibacillus mucilaginosus KNP414 chromosome, complete genomeRecF3e-41169
NC_012673:1679744:1696312169631216974301119Exiguobacterium sp. AT1b, complete genomeDNA replication and repair protein RecF5e-41168
NC_013895:66641:9426494264954121149Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completeputative recombination protein F1e-40167
NC_009089:1:3029302941441116Clostridium difficile 630, complete genomeDNA replication and repair protein1e-40167
NC_008262:1:3391339144761086Clostridium perfringens SM101, complete genomeDNA replication and repair protein RecF2e-40166
NC_003366:1:3566356646511086Clostridium perfringens str. 13, complete genomerecombination protein F2e-40166
NC_008261:1:3567356746521086Clostridium perfringens ATCC 13124, complete genomeDNA replication and repair protein RecF2e-40166
NC_007350:1:4036403651511116Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,DNA repair and genetic recombination protein3e-40166
NC_004461:1:3822382249371116Staphylococcus epidermidis ATCC 12228, complete genomerecombination protein F2e-39163
NC_015275:1:3052305241341083Clostridium lentocellum DSM 5427 chromosome, complete genomeDNA replication and repair protein RecF3e-39162
NC_018665:1:3495349546491155Exiguobacterium antarcticum B7 chromosome, complete genomeDNA replication and repair protein recF7e-39161
NC_007929:1805000:3309330944481140Lactobacillus salivarius subsp. salivarius UCC118, complete genomeDNA replication and repair protein2e-37156
NC_020291:1:3133313342151083Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA replication and repair protein RecF2e-37156
NC_011567:1:3339333944781140Anoxybacillus flavithermus WK1, complete genomeRecombinational DNA repair ATPase RecF4e-37155
NC_014098:3372000:3292329244041113Bacillus tusciae DSM 2912 chromosome, complete genomeDNA replication and repair protein RecF4e-37155
NC_010516:1:3035303541291095Clostridium botulinum B1 str. Okra, complete genomeDNA replication and repair protein RecF6e-37155
NC_014654:1:3111311142321122Halanaerobium sp. 'sapolanicus' chromosome, complete genomeDNA replication and repair protein RecF1e-36154
NC_009495:1:2998299841011104Clostridium botulinum A str. ATCC 3502 chromosome, complete genomerecombination protein F2e-36153
NC_009698:1:3007300741011095Clostridium botulinum A str. Hall chromosome, complete genomerecombination protein F3e-36152
NC_009697:1:3007300741011095Clostridium botulinum A str. ATCC 19397 chromosome, completerecombination protein F3e-36152
NC_012563:1:3164316442581095Clostridium botulinum A2 str. Kyoto, complete genomeDNA replication and repair protein RecF3e-36152
NC_012778:2997:2997299740881092Eubacterium eligens ATCC 27750, complete genomeDNA replication and repair protein RecF6e-36151
NC_017297:1:3008300841021095Clostridium botulinum F str. 230613 chromosome, complete genomeDNA replication and repair protein RecF6e-36151
NC_009699:1:3008300841021095Clostridium botulinum F str. Langeland chromosome, complete genomerecombination protein F6e-36151
NC_014761:1981435:1996460199646019974941035Oceanithermus profundus DSM 14977 chromosome, complete genomeDNA replication and repair protein recf8e-36151
NC_011979:4293859:2952295240461095Geobacter sp. FRC-32, complete genomeDNA replication and repair protein RecF2e-35150
NC_010520:1:3012301241061095Clostridium botulinum A3 str. Loch Maree, complete genomeDNA replication and repair protein RecF1e-35150
NC_010001:1:3870387049521083Clostridium phytofermentans ISDg, complete genomeDNA replication and repair protein RecF1e-35150
NC_014393:1:3443344345371095Clostridium cellulovorans 743B chromosome, complete genomeDNA replication and repair protein RecF2e-35149
NC_012658:1:3171317142651095Clostridium botulinum Ba4 str. 657 chromosome, complete genomerecombination protein F4e-35149
NC_006177:3549467:2948294840751128Symbiobacterium thermophilum IAM 14863, complete genomeDNA repair and genetic recombination protein4e-35149
NC_008593:2527064:2543402254340225444871086Clostridium novyi NT, complete genomerecF protein1e-34147
NC_014378:525717:3311331144351125Acetohalobium arabaticum DSM 5501 chromosome, complete genomeDNA replication and repair protein RecF2e-34147
NC_014378:4428:3311331144351125Acetohalobium arabaticum DSM 5501 chromosome, complete genomeDNA replication and repair protein RecF2e-34147
NC_010723:1:3175317542601086Clostridium botulinum E3 str. Alaska E43, complete genomeDNA replication and repair protein RecF2e-34146
NC_011837:1:3024302441271104Clostridium kluyveri NBRC 12016, complete genomerecombination protein F2e-34146
NC_015433:1998427:2013306201330620144001095Streptococcus suis ST3 chromosome, complete genomeDNA replication and repair protein RecF2e-34146
NC_009706:1:3033303341271095Clostridium kluyveri DSM 555 chromosome, complete genomerecombination protein F2e-34146
NC_010718:1:3167316743271161Natranaerobius thermophilus JW/NM-WN-LF, complete genomeDNA replication and repair protein RecF5e-34145
NC_014328:1:3117311742171101Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative DNA replication and repair protein RecF5e-34145
NC_021182:1:3446344645461101Clostridium pasteurianum BC1, complete genomerecF protein4e-34145
NC_010674:1:3223322343081086Clostridium botulinum B str. Eklund 17B, complete genomeDNA replication and repair protein RecF4e-34145
NC_015425:2752482:2768847276884727699291083Clostridium botulinum BKT015925 chromosome, complete genomeDNA replication and repair protein RecF2e-33144
NC_015565:2879603:2945294540481104Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeDNA replication and repair protein recF2e-33143
NC_007644:3229:3229322943411113Moorella thermoacetica ATCC 39073, complete genomeDNA replication and repair protein RecF2e-32140
NC_015687:1:3447344745381092Clostridium acetobutylicum DSM 1731 chromosome, complete genomerecombination protein F3e-32139
NC_003030:1:3447344745381092Clostridium acetobutylicum ATCC 824, complete genomerecombination protein F3e-32139
NC_012781:4065:2984298440721089Eubacterium rectale ATCC 33656, complete genomeDNA replication and repair protein RecF3e-32139
NC_015519:2739347:3080308041741095Tepidanaerobacter sp. Re1 chromosome, complete genomeDNA replication and repair protein recF4e-31135
NC_014221:169996:1925671925671936251059Truepera radiovictrix DSM 17093 chromosome, complete genomeDNA replication and repair protein RecF2e-30133
NC_015389:2101841:4395439555221128Coriobacterium glomerans PW2 chromosome, complete genomeDNA replication and repair protein RecF5e-30132
NC_011059:1:2893289340051113Prosthecochloris aestuarii DSM 271, complete genomeDNA replication and repair protein RecF6e-30131
NC_015703:6295500:6314430631443063155301101Runella slithyformis DSM 19594 chromosome, complete genomeDNA replication and repair protein recF2e-28126
NC_021184:1:3375337544751101Desulfotomaculum gibsoniae DSM 7213, complete genomerecF protein4e-28125
NC_010814:4099:2996299641021107Geobacter lovleyi SZ, complete genomeDNA replication and repair protein RecF6e-28125
NC_007677:71532:7153271532727701239Salinibacter ruber DSM 13855, complete genomeDNA replication and repair protein RecF1e-27124
NC_013171:1:3184318442631080Anaerococcus prevotii DSM 20548, complete genomeDNA replication and repair protein RecF1e-27124
NC_014032:71724:7172471724729621239Salinibacter ruber M8 chromosome, complete genomeDNA replication and repair protein RecF8e-28124
NC_014220:2398334:2716271638221107Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeDNA replication and repair protein RecF1e-26120
NC_014623:723089:7230897230897245341446Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeDNA replication and repair protein RecF2e-26120
NC_007498:3655304:2856285639471092Pelobacter carbinolicus DSM 2380, complete genomeDNA replication and repair protein2e-26119
NC_011060:3000067:2883288339921110Pelodictyon phaeoclathratiforme BU-1, complete genomeDNA replication and repair protein RecF4e-26119
NC_002932:2142000:2153826215382621549321107Chlorobium tepidum TLS, complete genomerecombination/replication protein RecF8e-26118
NC_014363:2035141:2043220204322020443081089Olsenella uli DSM 7084 chromosome, complete genomeDNA replication and repair protein RecF8e-24111
NC_015846:1065692:1064602106460210657051104Capnocytophaga canimorsus Cc5 chromosome, complete genomeDNA replication and repair protein recF7e-24111
NC_013204:3613824:4350435056121263Eggerthella lenta DSM 2243, complete genomeDNA replication and repair protein RecF1e-22107
NC_014836:2919508:2792279238231032Desulfurispirillum indicum S5 chromosome, complete genomeDNA replication and repair protein RecF3e-22106
NC_013170:1:2977297741131137Cryptobacterium curtum DSM 15641, complete genomerecF protein9e-22104
NC_014392:2513529:5071507161321062Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeDNA replication and repair protein RecF8e-21101
NC_013165:3146000:2840284039701131Slackia heliotrinireducens DSM 20476, complete genomerecF protein7e-2098.6
NC_015501:1669521:1685231168523116863461116Porphyromonas asaccharolytica DSM 20707 chromosome, completeDNA replication and repair protein recF2e-1997.1
NC_014150:1099507:1104826110482611058931068Brachyspira murdochii DSM 12563 chromosome, complete genomeDNA replication and repair protein RecF9e-1891.7
NC_008817:1538507:154529715452971546274978Prochlorococcus marinus str. MIT 9515, complete genomeputative DNA repair and genetic recombination protein RecF2e-1790.1
NC_017278:258921:2839422839422849731032Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein3e-1686.3
NC_008576:4701930:2711271138591149Magnetococcus sp. MC-1, complete genomeDNA replication and repair protein RecF2e-1583.6
NC_015436:1:2895289539741080Spirochaeta coccoides DSM 17374 chromosome, complete genomeDNA replication and repair protein recF2e-1480.5
NC_011297:1357947:1376151137615113772301080Dictyoglomus thermophilum H-6-12, complete genomeDNA replication and repair protein RecF3e-1480.1
NC_011661:1542335:1560523156052315616021080Dictyoglomus turgidum DSM 6724, complete genomeDNA replication and repair protein RecF7e-1375.1
NC_015714:1:2702270238351134Treponema paraluiscuniculi Cuniculi A chromosome, complete genomerecombination protein F1e-1274.3
NC_016842:1:2701270138341134Treponema pallidum subsp. pertenue str. SamoaD chromosome, completerecombination protein F2e-1273.9
NC_016843:1:2701270138341134Treponema pallidum subsp. pertenue str. Gauthier chromosome,recombination protein F2e-1273.9
NC_004337:3590323:3871536387153638726091074Shigella flexneri 2a str. 301, complete genomerecombination protein F2e-1273.9
NC_017268:1:2761276138341074Treponema pallidum subsp. pallidum str. Chicago chromosome,DNA replication and repair protein RecF2e-1273.9
NC_009092:4585784:2684268437661083Shewanella loihica PV-4, complete genomeDNA replication and repair protein RecF1e-1068.2
NC_015572:1:2684268437571074Methylomonas methanica MC09 chromosome, complete genomeDNA replication and repair protein recF3e-1066.6
NC_013854:3126385:3127580312758031287641185Azospirillum sp. B510, complete genomeDNA replication and repair protein4e-1066.2
NC_019907:46994:6656866568677011134Liberibacter crescens BT-1 chromosome, complete genomeDNA recombination and repair protein RecF8e-1065.1
NC_002516:6255854:3169316942781110Pseudomonas aeruginosa PAO1, complete genomerecombination protein F1e-0964.7
NC_005956:152497:1616811616811628141134Bartonella henselae str. Houston-1, complete genomerecombination protein F2e-0963.9
NC_020260:3931567:3931567393156739326401074Cronobacter sakazakii Sp291, complete genomerecombination protein F2e-0963.9
NC_014315:3319865:95019501105891089Nitrosococcus watsoni C-113 chromosome, complete genomeDNA replication and repair protein RecF1e-0861.6
NC_015709:1769806:1769806176980617709511146Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeDNA replication and repair protein RecF1e-0861.2
NC_012985:465354:4962314962314973581128Candidatus Liberibacter asiaticus str. psy62, complete genomerecombination protein F3e-0859.7
NC_010322:1:3844384449471104Pseudomonas putida GB-1 chromosome, complete genomerecombination protein F1e-0757.8
NC_010501:1:3081308141841104Pseudomonas putida W619, complete genomeDNA replication and repair protein RecF2e-0757.4
NC_009512:1:3062306241651104Pseudomonas putida F1, complete genomeDNA replication and repair protein RecF3e-0756.6
NC_002947:8394:1222212222133251104Pseudomonas putida KT2440, complete genomerecombination protein F3e-0756.2
NC_020209:4768500:4771601477160147727041104Pseudomonas poae RE*1-1-14, complete genomerecombination protein F4e-0756.2
NC_020300:131782:1412031412031423451143Bartonella australis Aust/NH1, complete genomerecombination protein F4e-0756.2