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Query: NC_007333:1677406:1679631 Thermobifida fusca YX, complete genome

Start: 1679631, End: 1680125, Length: 495

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015666:2721350:273513127351312735625495Halopiger xanaduensis SH-6 chromosome, complete genomehypothetical protein3e-1890.9
NC_019962:217798:234708234708235196489Natrinema pellirubrum DSM 15624, complete genomehypothetical protein9e-1786.3
NC_014834:2206119:221176922117692212278510Rhodopseudomonas palustris DX-1 chromosome, complete genomehypothetical protein2e-1374.7
NC_011894:4934304:493730049373004937803504Methylobacterium nodulans ORS 2060, complete genomeprotein of unknown function DUF8923e-1374.7
NC_013743:3681235:368704936870493687513465Haloterrigena turkmenica DSM 5511, complete genomeprotein of unknown function DUF8921e-1065.5
NC_011283:3379181:338208033820803382574495Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein8e-0959.7
NC_013850:3340882:334088233408823341376495Klebsiella variicola At-22 chromosome, complete genomeprotein of unknown function DUF8928e-0959.7
NC_009425:63709:741667416674642477Enterobacter sp. 638 plasmid pENTE01, complete sequencehypothetical protein2e-0858.2
NC_009441:3155500:316161131616113162264654Flavobacterium johnsoniae UW101 chromosome, complete genomehypothetical protein3e-0857.8
NC_017249:4398000:442027744202774420819543Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-0857.4
NC_011353:1761977:178330417833041783825522Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeYciF protein5e-0857
NC_013941:1613595:162837116283711628892522Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeYciF protein5e-0857
NC_008343:88184:101901101901102548648Granulibacter bethesdensis CGDNIH1, complete genomeprotein yciF5e-0857
NC_002655:2264773:227038722703872270887501Escherichia coli O157:H7 EDL933, complete genomeputative structural proteins5e-0857
AP010958:1472506:149216514921651492665501Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein5e-0857
NC_013008:1761165:178228017822801782780501Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein5e-0857
NC_013353:1472506:149216514921651492665501Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-0857
NC_013361:1754346:177541917754191775919501Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein5e-0857
NC_010473:1384000:140269014026901403190501Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein5e-0857
NC_010581:3387118:339239233923923392886495Beijerinckia indica subsp. indica ATCC 9039, complete genomeprotein of unknown function DUF8921e-0756.2