Pre_GI: BLASTP Hits

Some Help

Query: NC_007333:1559321:1566200 Thermobifida fusca YX, complete genome

Start: 1566200, End: 1566865, Length: 666

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014215:349917:3633313633313681124782Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,helicase1e-46186
NC_009328:2905000:2918927291892729236874761Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein2e-44178
NC_016943:1442885:1462107146210714668704764Blastococcus saxobsidens DD2, complete genomeputative Helicase4e-44177
NC_017955:1667500:1678714167871416834834770Modestobacter marinus, complete genomeHelicase6e-43173
NC_008752:620802:6280546280546328834830Acidovorax avenae subsp. citrulli AAC00-1, complete genometype III restriction enzyme, res subunit1e-41169
NC_008538:46469:5781957819626604842Arthrobacter sp. FB24 plasmid 2, complete sequencetype III restriction enzyme, res subunit2e-41169
NC_006958:3240019:3249976324997632549164941Corynebacterium glutamicum ATCC 13032, complete genomeDNA or RNA helicase of superfamily II5e-41167
NC_003450:3266604:3276669327666932816004932Corynebacterium glutamicum ATCC 13032, complete genomeputative helicase5e-41167
NC_017167:2298962:232698323269832327630648Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1putative helicase9e-41166
NC_017098:1542284:1558173155817315630234851Spirochaeta africana DSM 8902 chromosome, complete genomeputative helicase7e-40163
NC_008826:84218:8994089940947874848Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceadenine specific DNA methyltransferase, putative1e-39163
NC_012724:2682154:2696731269673127014944764Burkholderia glumae BGR1 chromosome 1, complete genomeAdenine specific DNA methyltransferase, putative2e-39162
NC_020133:5485528:5496869549686954989022034Mycobacterium liflandii 128FXT, complete genomeputative helicase4e-39161
NC_012846:1778443:1797703179770318026804978Bartonella grahamii as4aup, complete genome3e-38158
NC_012846:1952178:1969434196943419744104977Bartonella grahamii as4aup, complete genome3e-38158
NC_017986:1862408:1867994186799418728954902Pseudomonas putida ND6 chromosome, complete genomehelicase domain-containing protein7e-38157
NC_012846:929570:9295709295709344804911Bartonella grahamii as4aup, complete genomehelicase/methyltransferase2e-37155
NC_004578:20738:4744847448523584911Pseudomonas syringae pv. tomato str. DC3000, complete genomehelicase domain protein6e-37154
NC_014168:1724993:1735931173593117408414911Segniliparus rotundus DSM 44985 chromosome, complete genometype III restriction protein res subunit2e-36152
NC_009615:1734752:1779432177943217844264995Parabacteroides distasonis ATCC 8503 chromosome, complete genomehelicase2e-36152
NC_014844:442380:4507084507084555494842Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometype III restriction protein res subunit1e-36152
NC_015578:1038588:1050775105077510557544980Treponema primitia ZAS-2 chromosome, complete genomeendonuclease and methylase LlaGI3e-36151
NC_002937:2263763:2270961227096122757484788Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeadenine specific DNA methyltransferase, putative3e-36151
NC_008229:1149480:1153745115374511553431599Helicobacter acinonychis str. Sheeba, complete genomehelicase7e-36150
NC_015152:2026049:2036181203618120410794899Spirochaeta sp. Buddy chromosome, complete genometype III restriction protein res subunit1e-35149
NC_013165:1584977:1608043160804316135865544Slackia heliotrinireducens DSM 20476, complete genomepredicted helicase2e-35149
NC_011958:976500:99589499589410007564863Rhodobacter sphaeroides KD131 chromosome 2, complete genomehypothetical protein3e-35148
NC_015578:2191000:2208590220859022135905001Treponema primitia ZAS-2 chromosome, complete genomeendonuclease and methylase LlaGI8e-35146
NC_015673:1038673:1053210105321010548981689Corynebacterium resistens DSM 45100 chromosome, complete genomehypothetical protein5e-34144
NC_014153:3084356:3085256308525630902865031Thiomonas intermedia K12 chromosome, complete genometype III restriction protein res subunit7e-34144
NC_008095:2117952:2132683213268321376534971Myxococcus xanthus DK 1622, complete genomeputative restriction/modification enzyme2e-33142
NC_008341:29038:3215032150366914542Nitrosomonas eutropha C91 plasmid1, complete sequencetype III restriction enzyme, res subunit1e-32139
NC_017100:2035000:2037519203751920424114893Acetobacter pasteurianus IFO 3283-03, complete genomeDNA helicase restriction enzyme Type III R subunit3e-31135
NC_013209:2032500:2034864203486420397714908Acetobacter pasteurianus IFO 3283-01, complete genomeDNA helicase restriction enzyme Type III R subunit3e-31135
NC_017121:2032500:2034846203484620397534908Acetobacter pasteurianus IFO 3283-07, complete genomeDNA helicase restriction enzyme Type III R subunit3e-31135
NC_017146:2035000:2037526203752620424334908Acetobacter pasteurianus IFO 3283-26, complete genomeDNA helicase restriction enzyme Type III R subunit3e-31135
NC_017150:1940000:1942610194261019475174908Acetobacter pasteurianus IFO 3283-01-42C, complete genomeDNA helicase restriction enzyme Type III R subunit3e-31135
NC_017125:2035000:2037514203751420423914878Acetobacter pasteurianus IFO 3283-22, complete genomeDNA helicase restriction enzyme Type III R subunit3e-31135
NC_017108:2032500:203902020390202039748729Acetobacter pasteurianus IFO 3283-12, complete genomeDNA helicase restriction enzyme Type III R subunit6e-31134
NC_007651:3560652:3581602358160235833321731Burkholderia thailandensis E264 chromosome I, complete sequencehelicase domain protein7e-31134
NC_017111:2032500:203907720390772039766690Acetobacter pasteurianus IFO 3283-32, complete genomeDNA helicase restriction enzyme Type III R subunit8e-31133
NC_008686:50750:640066400664503498Paracoccus denitrificans PD1222 chromosome 1, complete sequencehypothetical protein1e-22106
NC_021064:816000:830394830394830966573Propionibacterium avidum 44067, complete genomehelicase2e-2099
NC_015578:3914189:3925412392541239291103699Treponema primitia ZAS-2 chromosome, complete genomeDNA modification methylase2e-1892.4
NC_010545:1475410:148354014835401483938399Corynebacterium urealyticum DSM 7109, complete genomehypothetical protein4e-1788.2
NC_017167:1648913:171959117195911719857267Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1putative helicase4e-1788.2
NC_017167:1648913:1719871171987117242504380Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1adenine specific DNA methyltransferase4e-1581.6
NC_010161:1368500:138344513834451383795351Bartonella tribocorum CIP 105476, complete genomehelicase domain-containing protein2e-1479
NC_010161:432000:434103434103434453351Bartonella tribocorum CIP 105476, complete genomehelicase domain-containing protein2e-1479
NC_014820:1057826:1069328106932810708391512Cenarchaeum symbiosum A, complete genomehelicase4e-1478.2
NC_012846:986877:989508989508989916409Bartonella grahamii as4aup, complete genome2e-0859.3
NC_012846:1708840:172428217242821724690409Bartonella grahamii as4aup, complete genome2e-0859.3
NC_021064:816000:830963830963831121159Propionibacterium avidum 44067, complete genomehelicase4e-0651.6