Pre_GI: BLASTN Hits

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Query: NC_006905:2987863 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 2987863, End: 3008110, Length: 20248

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011206:1379068*1379068140505225985Acidithiobacillus ferrooxidans ATCC 53993, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013416:16493*164933535418862Aggregatibacter actinomycetemcomitans D11S-1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013717:572657263053624811Citrobacter rodentium ICC168 plasmid pCROD1, complete sequence4e-1487.7BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome1e-20109BLASTN svgBLASTP svg
NC_021182:2883716*2883716290856724852Clostridium pasteurianum BC1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome6e-44186BLASTN svgBLASTP svg
NC_014500:20191132019113204779528683Dickeya dadantii 3937 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_012880:3421500*3421500345764636147Dickeya dadantii Ech703, complete genome6e-118432BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_012912:22857782285778231059124814Dickeya zeae Ech1591, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_012779:3176820*3176820323178054961Edwardsiella ictaluri 93-146, complete genome2e-46194BLASTN svgBLASTP svg
NC_012779:30596930596933285826890Edwardsiella ictaluri 93-146, complete genome6e-44186BLASTN svgBLASTP svg
NC_012779:2928000*2928000295428726288Edwardsiella ictaluri 93-146, complete genome2e-46194BLASTN svgBLASTP svg
NC_012779:26648492664849268361918771Edwardsiella ictaluri 93-146, complete genome6e-44186BLASTN svgBLASTP svg
NC_012779:26198712619871264372223852Edwardsiella ictaluri 93-146, complete genome2e-46194BLASTN svgBLASTP svg
NC_012779:21849272184927220656121635Edwardsiella ictaluri 93-146, complete genome6e-44186BLASTN svgBLASTP svg
NC_012779:19662051966205198609919895Edwardsiella ictaluri 93-146, complete genome2e-46194BLASTN svgBLASTP svg
NC_012779:21275422127542216530837767Edwardsiella ictaluri 93-146, complete genome6e-44186BLASTN svgBLASTP svg
NC_012779:1449500*1449500150683157332Edwardsiella ictaluri 93-146, complete genome2e-46194BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome6e-44186BLASTN svgBLASTP svg
NC_012779:28560512856051288659930549Edwardsiella ictaluri 93-146, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_012779:261438*26143828632424887Edwardsiella ictaluri 93-146, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_012779:12865001286500132459938100Edwardsiella ictaluri 93-146, complete genome2e-46194BLASTN svgBLASTP svg
NC_012779:91600091600093379317794Edwardsiella ictaluri 93-146, complete genome2e-46194BLASTN svgBLASTP svg
NC_012779:610509*61050963687526367Edwardsiella ictaluri 93-146, complete genome2e-46194BLASTN svgBLASTP svg
NC_012779:34699834699837871931722Edwardsiella ictaluri 93-146, complete genome2e-46194BLASTN svgBLASTP svg
NC_012779:95755895755898306025503Edwardsiella ictaluri 93-146, complete genome6e-44186BLASTN svgBLASTP svg
NC_013508:16874321687432172109933668Edwardsiella tarda EIB202, complete genome1e-48202BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013961:851044*85104488459933556Erwinia amylovora, complete genome2e-87331BLASTN svgBLASTP svg
NC_004547:1174650*1174650121156236913Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-63252BLASTN svgBLASTP svg
NC_012214:2221702*2221702227363551934Erwinia pyrifoliae Ep1/96, complete genome3e-30141BLASTN svgBLASTP svg
NC_012214:1650523*1650523168104730525Erwinia pyrifoliae Ep1/96, complete genome3e-30141BLASTN svgBLASTP svg
NC_012214:13555001355500137677021271Erwinia pyrifoliae Ep1/96, complete genome3e-30141BLASTN svgBLASTP svg
NC_012214:12126161212616123625023635Erwinia pyrifoliae Ep1/96, complete genome3e-30141BLASTN svgBLASTP svg
NC_010694:2971170*2971170300344632277Erwinia tasmaniensis, complete genome2e-46194BLASTN svgBLASTP svg
NC_010694:21380002138000218529147292Erwinia tasmaniensis, complete genome2e-19105BLASTN svgBLASTP svg
NC_008253:28285732828573285250723935Escherichia coli 536, complete genome01586BLASTN svgBLASTP svg
NC_008253:29650029650032229825799Escherichia coli 536, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome7e-19103BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome3e-18101BLASTN svgBLASTP svg
NC_004431:11665681166568119813631569Escherichia coli CFT073, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_009801:17566101756610177871522106Escherichia coli E24377A, complete genome3e-18101BLASTN svgBLASTP svg
NC_009801:30138383013838304465430817Escherichia coli E24377A, complete genome01953BLASTN svgBLASTP svg
CU928160:2091249*2091249211444123193Escherichia coli IAI1 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_011750:49780004978000500028022281Escherichia coli IAI39 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_000913:558920*55892058509926180Escherichia coli K12, complete genome3e-18101BLASTN svgBLASTP svg
NC_000913:303719*30371932647122753Escherichia coli K12, complete genome3e-18101BLASTN svgBLASTP svg
NC_000913:1087062*1087062110699919938Escherichia coli K12, complete genome3e-18101BLASTN svgBLASTP svg
CP002516:44744*447447499130248Escherichia coli KO11, complete genome3e-21111BLASTN svgBLASTP svg
CP002516:1165726*1165726119130025575Escherichia coli KO11, complete genome3e-21111BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome6e-0763.9BLASTN svgBLASTP svg
AP010958:5090696*5090696512565934964Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-45192BLASTN svgBLASTP svg
AP010958:36273553627355365976432410Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-45192BLASTN svgBLASTP svg
NC_002655:22647732264773228824723475Escherichia coli O157:H7 EDL933, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_002655:3769643*3769643381434344701Escherichia coli O157:H7 EDL933, complete genome3e-24121BLASTN svgBLASTP svg
NC_002655:16559441655944168171125768Escherichia coli O157:H7 EDL933, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002655:46531604653160470328250123Escherichia coli O157:H7 EDL933, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_002695:17946351794635181624421610Escherichia coli O157:H7 str. Sakai, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_002695:3702344*3702344374703744694Escherichia coli O157:H7 str. Sakai, complete genome3e-24121BLASTN svgBLASTP svg
NC_002695:15713891571389159815826770Escherichia coli O157:H7 str. Sakai, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_002695:45841774584177463575951583Escherichia coli O157:H7 str. Sakai, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010498:11179381117938114953131594Escherichia coli SMS-3-5, complete genome1e-26129BLASTN svgBLASTP svg
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome2e-0765.9BLASTN svgBLASTP svg
CU928159:30700*307004909918400Escherichia coli str. 55989 plasmid 55989p, complete genome3e-21111BLASTN svgBLASTP svg
NC_010473:498252*49825252418825937Escherichia coli str. K-12 substr. DH10B, complete genome3e-18101BLASTN svgBLASTP svg
NC_010473:27994827994830350723560Escherichia coli str. K-12 substr. DH10B, complete genome3e-18101BLASTN svgBLASTP svg
NC_011751:3285646*3285646333126645621Escherichia coli UMN026 chromosome, complete genome3e-30141BLASTN svgBLASTP svg
NC_007946:47797454779745482809648352Escherichia coli UTI89, complete genome3e-1591.7BLASTN svgBLASTP svg
CP002185:4035502*4035502406409928598Escherichia coli W, complete genome3e-21111BLASTN svgBLASTP svg
CP002185:2919752*2919752294461024859Escherichia coli W, complete genome3e-21111BLASTN svgBLASTP svg
AC_000091:55892055892058720428285Escherichia coli W3110 DNA, complete genome3e-18101BLASTN svgBLASTP svg
AC_000091:30371930371932647122753Escherichia coli W3110 DNA, complete genome3e-18101BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome3e-18101BLASTN svgBLASTP svg
NC_011740:28599332859933288499725065Escherichia fergusonii ATCC 35469, complete genome2e-28135BLASTN svgBLASTP svg
NC_014733:18570201857020189477137752Methylovorus sp. MP688 chromosome, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_014562:2563466*2563466261248449019Pantoea vagans C9-1 chromosome, complete genome2e-50208BLASTN svgBLASTP svg
NC_012917:32411963241196329451553320Pectobacterium carotovorum subsp. carotovorum PC1, complete genome9e-0660BLASTN svgBLASTP svg
NC_010067:51000510007450923510Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete06010BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-102379BLASTN svgBLASTP svg
NC_011149:29122192912219296814855930Salmonella enterica subsp. enterica serovar Agona str. SL483,020430BLASTN svgBLASTP svg
NC_011149:44740124474012449847024459Salmonella enterica subsp. enterica serovar Agona str. SL483,4e-82313BLASTN svgBLASTP svg
NC_006905:1961774*1961774198409922326Salmonella enterica subsp. enterica serovar Choleraesuis str2e-1075.8BLASTN svgBLASTP svg
NC_006905:4486433*4486433450919922767Salmonella enterica subsp. enterica serovar Choleraesuis str3e-89337BLASTN svgBLASTP svg
NC_011083:40302240302245026847247Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-35159BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-86327BLASTN svgBLASTP svg
NC_011083:30097603009760303011220353Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,018700BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-84321BLASTN svgBLASTP svg
NC_011083:1993672*1993672201930525634Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,4e-0867.9BLASTN svgBLASTP svg
NC_011080:1944226*1944226198035236127Salmonella enterica subsp. enterica serovar Newport str. SL254,4e-0867.9BLASTN svgBLASTP svg
NC_011080:29823462982346303624053895Salmonella enterica subsp. enterica serovar Newport str. SL254,020590BLASTN svgBLASTP svg
NC_006511:44654954465495449196526471Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-62248BLASTN svgBLASTP svg
NC_006511:28191282819128287100051873Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC023320BLASTN svgBLASTP svg
NC_006511:10632491063249108659923351Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-1383.8BLASTN svgBLASTP svg
NC_010102:44778364477836450325125416Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-89337BLASTN svgBLASTP svg
NC_010102:11372471137247116298725741Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-0661.9BLASTN svgBLASTP svg
NC_010102:29674642967464302271055247Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,020370BLASTN svgBLASTP svg
NC_003198:4676536*4676536471603539500Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-62248BLASTN svgBLASTP svg
NC_003198:28565962856596290597449379Salmonella enterica subsp. enterica serovar Typhi str. CT18,023310BLASTN svgBLASTP svg
NC_003198:18674561867456189339125936Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-1383.8BLASTN svgBLASTP svg
NC_004631:4661000*4661000468421223213Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-62248BLASTN svgBLASTP svg
NC_004631:28721922872192289431722126Salmonella enterica subsp. enterica serovar Typhi Ty2, complete023310BLASTN svgBLASTP svg
NC_004631:10913031091303111095919657Salmonella enterica subsp. enterica serovar Typhi Ty2, complete6e-1383.8BLASTN svgBLASTP svg
NC_003197:1945858*1945858197472828871Salmonella typhimurium LT2, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003197:3005842*3005842306162755786Salmonella typhimurium LT2, complete genome020470BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome3e-86327BLASTN svgBLASTP svg
NC_020064:3998715*3998715409080492090Serratia marcescens FGI94, complete genome1e-51212BLASTN svgBLASTP svg
NC_020064:1409596*1409596145680247207Serratia marcescens FGI94, complete genome3e-49204BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome1e-20109BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome2e-22115BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_004337:1065609*1065609109071125103Shigella flexneri 2a str. 301, complete genome3e-18101BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome1e-20109BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome4e-20107BLASTN svgBLASTP svg
NC_008258:1076922*1076922110024923328Shigella flexneri 5 str. 8401, complete genome1e-20109BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome4e-20107BLASTN svgBLASTP svg
NC_007712:3629358*3629358365546826111Sodalis glossinidius str. 'morsitans', complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007712:31630003163000318759924600Sodalis glossinidius str. 'morsitans', complete genome6e-0763.9BLASTN svgBLASTP svg
NC_007712:254000*25400027659922600Sodalis glossinidius str. 'morsitans', complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007712:1954808*1954808197959924792Sodalis glossinidius str. 'morsitans', complete genome6e-0763.9BLASTN svgBLASTP svg
NC_007712:12625931262593129009927507Sodalis glossinidius str. 'morsitans', complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007712:29780002978000300020322204Sodalis glossinidius str. 'morsitans', complete genome2e-0971.9BLASTN svgBLASTP svg
NC_007712:1712667*1712667173153718871Sodalis glossinidius str. 'morsitans', complete genome2e-0971.9BLASTN svgBLASTP svg
NC_007712:1893066*1893066191459921534Sodalis glossinidius str. 'morsitans', complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008346:983816*983816100718823373Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete2e-0971.9BLASTN svgBLASTP svg