Pre_GI: BLASTN Hits

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Query: NC_006905:2235607 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 2235607, End: 2264363, Length: 28757

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011149:21795922179592220743527844Salmonella enterica subsp. enterica serovar Agona str. SL483,024560BLASTN svgBLASTP svg
NC_003198:21796882179688220742827741Salmonella enterica subsp. enterica serovar Typhi str. CT18,024350BLASTN svgBLASTP svg
NC_004631:79981079981083168931880Salmonella enterica subsp. enterica serovar Typhi Ty2, complete018160BLASTN svgBLASTP svg
NC_006511:79254379254382457832036Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC017960BLASTN svgBLASTP svg
NC_009792:64288164288166509922219Citrobacter koseri ATCC BAA-895, complete genome02292BLASTN svgBLASTP svg
NC_004431:24449722444972246809923128Escherichia coli CFT073, complete genome01277BLASTN svgBLASTP svg
NC_008253:21985832198583221778119199Escherichia coli 536, complete genome01261BLASTN svgBLASTP svg
NC_010468:1694729*1694729171759922871Escherichia coli ATCC 8739, complete genome01221BLASTN svgBLASTP svg
NC_010473:2267851*2267851229294125091Escherichia coli str. K-12 substr. DH10B, complete genome01183BLASTN svgBLASTP svg
CP002185:2347413*2347413237250325091Escherichia coli W, complete genome01176BLASTN svgBLASTP svg
NC_011750:955451*95545197876923319Escherichia coli IAI39 chromosome, complete genome01166BLASTN svgBLASTP svg
NC_014121:34839763483976350876424789Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete0912BLASTN svgBLASTP svg
NC_015968:30535653053565307621422650Enterobacter asburiae LF7a chromosome, complete genome0827BLASTN svgBLASTP svg
NC_011740:2220251*2220251224611525865Escherichia fergusonii ATCC 35469, complete genome0650BLASTN svgBLASTP svg
NC_007384:2251792*2251792227443422643Shigella sonnei Ss046, complete genome1e-132482BLASTN svgBLASTP svg
CU928160:2239637*2239637226345123815Escherichia coli IAI1 chromosome, complete genome1e-132482BLASTN svgBLASTP svg
NC_013421:13978411397841141728819448Pectobacterium wasabiae WPP163, complete genome2e-128468BLASTN svgBLASTP svg
NC_002695:2854629*2854629287509920471Escherichia coli O157:H7 str. Sakai, complete genome2e-125458BLASTN svgBLASTP svg
AC_000091:2185369*2185369220724521877Escherichia coli W3110 DNA, complete genome9e-121442BLASTN svgBLASTP svg
NC_002655:2925787*2925787294624420458Escherichia coli O157:H7 EDL933, complete genome1e-113418BLASTN svgBLASTP svg
NC_013592:33973043397304341695019647Dickeya dadantii Ech586, complete genome3e-102381BLASTN svgBLASTP svg
NC_006155:33333033333303335118117879Yersinia pseudotuberculosis IP 32953, complete genome3e-71278BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome7e-69270BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome7e-69270BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome7e-69270BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome7e-69270BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome7e-69270BLASTN svgBLASTP svg
NC_010634:32508103250810326864117832Yersinia pseudotuberculosis PB1/+, complete genome7e-69270BLASTN svgBLASTP svg
NC_004337:2185282*2185282220846123180Shigella flexneri 2a str. 301, complete genome1e-67266BLASTN svgBLASTP svg
NC_008570:1094442*1094442111732922888Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome3e-59238BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-47198BLASTN svgBLASTP svg
NC_000913:2180855*2180855220193321079Escherichia coli K12, complete genome9e-47196BLASTN svgBLASTP svg
NC_009800:2225182*2225182224625921078Escherichia coli HS, complete genome9e-47196BLASTN svgBLASTP svg
NC_008258:2190635*2190635221013919505Shigella flexneri 5 str. 8401, complete genome2e-44188BLASTN svgBLASTP svg
NC_004741:2169877*2169877219012220246Shigella flexneri 2a str. 2457T, complete genome2e-44188BLASTN svgBLASTP svg
NC_014500:35197223519722353859918878Dickeya dadantii 3937 chromosome, complete genome4e-27131BLASTN svgBLASTP svg
NC_012660:4558122*4558122459234134220Pseudomonas fluorescens SBW25 chromosome, complete genome3e-19105BLASTN svgBLASTP svg
NC_007384:17633751763375178359920225Shigella sonnei Ss046, complete genome3e-19105BLASTN svgBLASTP svg
NC_010468:2406387*2406387242509318707Escherichia coli ATCC 8739, complete genome4e-18101BLASTN svgBLASTP svg
CU928160:25693225693227863921708Escherichia coli IAI1 chromosome, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_014910:20450882045088206811623029Alicycliphilus denitrificans BC chromosome, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_020211:22065002206500222782621327Serratia marcescens WW4, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_014366:1814000*1814000183684822849Gamma proteobacterium HdN1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_013194:63403963403965427420236Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete1e-1593.7BLASTN svgBLASTP svg
NC_015422:23269422326942235046523524Alicycliphilus denitrificans K601 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007384:27881027881029760818799Shigella sonnei Ss046, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_002655:26123626123628140820173Escherichia coli O157:H7 EDL933, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_002695:26123526123528377222538Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003296:14615381461538148411822581Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete2e-1075.8BLASTN svgBLASTP svg
NC_006370:768745*76874579247423730Photobacterium profundum SS9 chromosome 1, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_013716:4824541*4824541484830623766Citrobacter rodentium ICC168, complete genome1e-0869.9BLASTN svgBLASTP svg
AC_000091:39952333995233402122325991Escherichia coli W3110 DNA, complete genome2e-0765.9BLASTN svgBLASTP svg
CP002185:39645003964500398613821639Escherichia coli W, complete genome2e-0765.9BLASTN svgBLASTP svg
CP002185:79473279473281843123700Escherichia coli W, complete genome2e-0765.9BLASTN svgBLASTP svg
CP002516:119935*11993514694827014Escherichia coli KO11, complete genome2e-0765.9BLASTN svgBLASTP svg
CU928145:41319244131924415503823115Escherichia coli 55989 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006905:32651732651735159925083Salmonella enterica subsp. enterica serovar Choleraesuis str2e-0765.9BLASTN svgBLASTP svg
NC_009800:3787320*3787320380985222533Escherichia coli HS, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009801:40739684073968409617422207Escherichia coli E24377A, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010468:32093263209326323524825923Escherichia coli ATCC 8739, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011080:33312133312135949426374Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-0765.9BLASTN svgBLASTP svg
NC_011748:41319244131924415503823115Escherichia coli 55989, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011149:30955630955633763728082Salmonella enterica subsp. enterica serovar Agona str. SL483,9e-0763.9BLASTN svgBLASTP svg
NC_012779:91600091600093379317794Edwardsiella ictaluri 93-146, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010468:111504*11150413814926646Escherichia coli ATCC 8739, complete genome3e-0661.9BLASTN svgBLASTP svg