Pre_GI: BLASTP Hits

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Query: NC_006905:848000:848508 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 848508, End: 848583, Length: 76

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011186:515214:52528252528252535776Vibrio fischeri MJ11 chromosome II, complete sequencetRNA-Lys1e-0651.6
NC_009648:838000:83881283881283888776Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys1e-0651.6
NC_011184:2723000:27324632732463273253876Vibrio fischeri MJ11 chromosome I, complete sequencetRNA-Lys1e-0651.6
NC_010694:2565580:25900612590061259013676Erwinia tasmaniensis, complete genometRNA-Lys1e-0651.6
NC_006905:848000:84829884829884837376Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Lys1e-0651.6
NC_006370:768745:78131978131978139476Photobacterium profundum SS9 chromosome 1, complete sequencetRNA-Lys1e-0651.6
NC_009648:838000:83902183902183909676Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys1e-0651.6
NC_013961:1246454:12465341246534124660976Erwinia amylovora, complete genometRNA-Lys1e-0651.6
NC_012214:2673058:26968092696809269688476Erwinia pyrifoliae Ep1/96, complete genometRNA-Lys1e-0651.6
NC_009648:838000:83859083859083866576Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys1e-0651.6
NC_010694:2565580:25908662590866259094176Erwinia tasmaniensis, complete genometRNA-Lys1e-0651.6
NC_009648:838000:83828683828683836176Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys1e-0651.6
NC_010694:2565580:25904632590463259053876Erwinia tasmaniensis, complete genometRNA-Lys1e-0651.6
NC_013457:979102:98806598806598814076Vibrio sp. Ex25 chromosome 2, complete genometRNA-Lys1e-0651.6
NC_010694:2565580:25912382591238259131376Erwinia tasmaniensis, complete genometRNA-Lys1e-0651.6
NC_009648:838000:83800783800783808276Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys1e-0651.6
NC_012214:2673058:26970422697042269711776Erwinia pyrifoliae Ep1/96, complete genometRNA-Lys1e-0651.6
NC_006905:848000:84808384808384815876Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Lys1e-0651.6
NC_011184:2840713:28522722852272285234776Vibrio fischeri MJ11 chromosome I, complete sequencetRNA-Lys1e-0651.6
NC_016860:857500:85822985822985830476Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Lys1e-0651.6
NC_016860:857500:85801985801985809476Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Lys1e-0651.6
NC_016860:857500:85789485789485796976Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Lys1e-0651.6
NC_016860:857500:85760885760885768376Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Lys1e-0651.6
NC_016856:819482:81989681989681997176Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Lys1e-0651.6
NC_016856:819482:81968681968681976176Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Lys1e-0651.6
NC_016856:819482:81956181956181963676Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Lys1e-0651.6
NC_012125:793812:79706379706379713876Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Lys1e-0651.6
NC_012125:793812:79685379685379692876Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Lys1e-0651.6
NC_011149:779903:78343978343978351476Salmonella enterica subsp. enterica serovar Agona str. SL483,tRNA-Lys1e-0651.6
NC_011083:862901:86730386730386737876Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tRNA-Lys1e-0651.6
NC_012214:2673058:26972762697276269735176Erwinia pyrifoliae Ep1/96, complete genometRNA-Lys1e-0651.6
NC_011080:819103:82397082397082404576Salmonella enterica subsp. enterica serovar Newport str. SL254,tRNA-Lys1e-0651.6
NC_011080:819103:82351082351082358576Salmonella enterica subsp. enterica serovar Newport str. SL254,tRNA-Lys1e-0651.6
NC_011083:862901:86763886763886771376Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tRNA-Lys1e-0651.6
NC_012125:793812:79663879663879671376Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Lys1e-0651.6
NC_010102:2287934:23045662304566230463873Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Lys5e-0650.1
NC_010102:2287934:23047762304776230484873Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Lys5e-0650.1
NC_010102:2287934:23052822305282230535473Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Lys5e-0650.1
NC_010102:2287934:23049912304991230506373Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,tRNA-Lys5e-0650.1
NC_011274:793681:79649579649579656773Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91tRNA-Lys5e-0650.1
NC_011274:793681:79678679678679685873Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91tRNA-Lys5e-0650.1
NC_013971:1283942:12840221284022128409473Erwinia amylovora ATCC 49946 chromosome, complete genometRNA-Lys5e-0650.1
NC_016831:2209834:22264802226480222655273Salmonella enterica subsp. enterica serovar Gallinarum/pullorumtRNA-Lys5e-0650.1
NC_010465:2582080:25938202593820259389576Yersinia pseudotuberculosis YPIII, complete genometRNA-Lys6e-0649.7
NC_005810:1663672:16807191680719168079476Yersinia pestis biovar Microtus str. 91001, complete genometRNA-Lys6e-0649.7
NC_003143:2101902:21085072108507210858276Yersinia pestis CO92, complete genometRNA-Lys6e-0649.7
NC_006155:2084669:20901332090133209020876Yersinia pseudotuberculosis IP 32953, complete genometRNA-Lys6e-0649.7
NC_013421:1696746:17228081722808172288376Pectobacterium wasabiae WPP163, complete genometRNA-Lys6e-0649.7
NC_015224:2061951:20677122067712206778776Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,tRNA-Lys6e-0649.7
NC_008150:1384102:13915861391586139166176Yersinia pestis Antiqua, complete genometRNA-Lys6e-0649.7
NC_008800:2127918:21332602133260213333576Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,tRNA-Lys6e-0649.7
NC_009381:1414985:14276031427603142767876Yersinia pestis Pestoides F chromosome, complete genometRNA-Lys6e-0649.7
NC_014029:2388500:24014822401482240155776Yersinia pestis Z176003 chromosome, complete genometRNA-Lys6e-0649.7
NC_017154:2100587:21080492108049210812476Yersinia pestis D106004 chromosome, complete genometRNA-Lys6e-0649.7
NC_017160:2414000:24304882430488243056376Yersinia pestis D182038 chromosome, complete genometRNA-Lys6e-0649.7
NC_017168:3535786:35524313552431355250676Yersinia pestis A1122 chromosome, complete genometRNA-Lys6e-0649.7
NC_012912:1200000:12163821216382121645776Dickeya zeae Ech1591, complete genometRNA-Lys7e-0649.3