Pre_GI: BLASTP Hits

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Query: NC_006905:4638707:4654491 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 4654491, End: 4655762, Length: 1272

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:4716000:4731807473180747330781272Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein0860
NC_007973:3065632:3076276307627630777001425Ralstonia metallidurans CH34 chromosome 1, complete sequencehypothetical protein9e-95347
NC_014844:2721746:2738600273860027398621263Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomehypothetical protein1e-94347
NC_016633:1353458:1364246136424613655441299Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeDNA methylase2e-49196
NC_012914:336750:3483593483593496691311Paenibacillus sp. JDR-2, complete genomehypothetical protein4e-49196
NC_015571:2044000:2089976208997620912681293Porphyromonas gingivalis TDC60, complete genomehypothetical protein9e-42171
NC_010655:373437:3824743824743837691296Akkermansia muciniphila ATCC BAA-835, complete genomehypothetical protein6e-40165
NC_020272:3706722:3715569371556937166151047Bacillus amyloliquefaciens IT-45, complete genomeDNA methylase5e-38159
NC_009952:1984955:1999930199993020013781449Dinoroseobacter shibae DFL 12, complete genomeputative modification methylase4e-28126
NC_010943:1884695:1892783189278318942911509Stenotrophomonas maltophilia K279a, complete genomeputative modification methylase2e-26120
NC_015573:2463123:2474839247483924761161278Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA methylase N-4/N-6 domain-containing protein3e-21103
NC_005835:1773482:1786343178634317875751233Thermus thermophilus HB27, complete genomehypothetical protein8e-1995.1
NC_012804:141914:1532251532251546221398Thermococcus gammatolerans EJ3, complete genomeSite-specific DNA-methyltransferase (cytosine-N(4)-specific)5e-1789.4
NC_014666:4419693:4432836443283644339661131Frankia sp. EuI1c chromosome, complete genomeDNA methylase N-4/N-6 domain protein1e-0964.7
NC_012030:345837:3556403556403570011362Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completeadenine-specific DNA methylase1e-0964.7
NC_000909:1408276:1416977141697714185691593Methanocaldococcus jannaschii DSM 2661, complete genomemodification methylase, type II R/M system1e-0654.7
NC_016026:296951:3041113041113053041194Micavibrio aeruginosavorus ARL-13 chromosome, complete genomehypothetical protein3e-0653.1
NC_014376:317312:3242053242053254671263Clostridium saccharolyticum WM1 chromosome, complete genomemodification methylase8e-0652