Pre_GI: BLASTP Hits

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Query: NC_006905:3942753:3944108 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 3944108, End: 3945430, Length: 1323

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016831:3779611:3799287379928738006091323Salmonella enterica subsp. enterica serovar Gallinarum/pullorumD-serine dehydratase0884
NC_011274:3799696:3818456381845638197781323Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91D-serine dehydratase0884
NC_016857:4025767:4025767402576740270891323Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74D-serine dehydratase0884
NC_004631:3809678:3828443382844338297651323Salmonella enterica subsp. enterica serovar Typhi Ty2, completeD-serine dehydratase0880
NC_003198:3824187:3842953384295338442751323Salmonella enterica subsp. enterica serovar Typhi str. CT18,D-serine dehydratase0880
NC_016832:3798475:3817240381724038185621323Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,D-serine ammonia-lyase0879
NC_011745:2751437:2753945275394527552731329Escherichia coli ED1a chromosome, complete genomeD-serine dehydratase0796
CU928160:2513000:2516072251607225174001329Escherichia coli IAI1 chromosome, complete genomeD-serine ammonia-lyase0794
NC_009801:2639787:2642711264271126440391329Escherichia coli E24377A, complete genomeD-serine ammonia-lyase0794
AP010958:2911741:2930199293019929315271329Escherichia coli O103:H2 str. 12009 DNA, complete genomeD-serine ammonia-lyase DsdA0794
NC_009800:2505872:2510607251060725119351329Escherichia coli HS, complete genomeD-serine ammonia-lyase0794
NC_011741:2513000:2516072251607225174001329Escherichia coli IAI1 chromosome, complete genomeD-serine dehydratase0794
NC_012947:1363724:1381486138148613828141329Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeD-serine dehydratase0794
NC_012967:2409500:2413429241342924147571329Escherichia coli B str. REL606 chromosome, complete genomeD-serine dehydratase0794
NC_013353:2911741:2930199293019929315271329Escherichia coli O103:H2 str. 12009, complete genomeD-serine ammonia-lyase DsdA0794
AC_000091:2462461:2484648248464824859761329Escherichia coli W3110 DNA, complete genomeD-serine ammonia-lyase0793
CP002516:1419413:1440868144086814421961329Escherichia coli KO11, complete genomeD-serine ammonia-lyase0793
NC_010468:1412791:1430553143055314318811329Escherichia coli ATCC 8739, complete genomeD-serine ammonia-lyase0793
NC_000913:2455037:2477224247722424785521329Escherichia coli K12, complete genomeD-serine dehydratase0793
NC_010473:2548946:2568989256898925703171329Escherichia coli str. K-12 substr. DH10B, complete genomeD-serine ammonia-lyase0793
CP002185:2659628:2663661266366126649891329Escherichia coli W, complete genomeD-serine ammonia-lyase0793
NC_011415:2732000:2747310274731027486381329Escherichia coli SE11 chromosome, complete genomeD-serine dehydratase0793
NC_012759:2342986:2363029236302923643571329Escherichia coli BW2952 chromosome, complete genomeD-serine dehydratase0793
NC_011750:2585015:2601004260100426023351332Escherichia coli IAI39 chromosome, complete genomeD-serine dehydratase0793
NC_013008:3231414:3266326326632632676541329Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeD-serine dehydratase0793
NC_011353:3276734:3311455331145533127831329Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeD-serine dehydratase0793
NC_002695:3189425:3207339320733932086671329Escherichia coli O157:H7 str. Sakai, complete genomeD-serine dehydratase0793
NC_002655:3260500:3277298327729832786261329Escherichia coli O157:H7 EDL933, complete genomeD-serine dehydratase0793
NC_016902:1419413:1440868144086814421961329Escherichia coli KO11FL chromosome, complete genomeD-serine ammonia-lyase0793
NC_011751:2768864:2771788277178827731191332Escherichia coli UMN026 chromosome, complete genomeD-serine dehydratase0792
NC_004431:2747237:2761590276159027629181329Escherichia coli CFT073, complete genomeD-serine dehydratase0792
NC_013361:3313284:3337364333736433386921329Escherichia coli O26:H11 str. 11368 chromosome, complete genomeD-serine dehydratase0792
NC_010498:2555706:2570037257003725713531317Escherichia coli SMS-3-5, complete genomeD-serine ammonia-lyase0791
NC_008563:2610499:2613007261300726143351329Escherichia coli APEC O1, complete genomeD-serine dehydratase0791
NC_007946:2625461:2640470264047026417981329Escherichia coli UTI89, complete genomeD-serine dehydratase0791
NC_011742:2533500:2536102253610225374301329Escherichia coli S88 chromosome, complete genomeD-serine dehydratase0791
CU928145:2708500:2711583271158327129111329Escherichia coli 55989 chromosome, complete genomeD-serine ammonia-lyase0790
NC_011748:2708500:2711583271158327129111329Escherichia coli 55989, complete genomeD-serine dehydratase0790
CP002797:2472908:2481834248183424831471314Escherichia coli NA114, complete genomeD-serine dehydratase0790
NC_008258:2473000:2476004247600424773321329Shigella flexneri 5 str. 8401, complete genomeD-serine dehydratase0790
NC_016822:2678691:2683185268318526845131329Shigella sonnei 53G, complete genomeD-serine dehydratase0790
NC_007384:2587876:2592370259237025936981329Shigella sonnei Ss046, complete genomeD-serine dehydratase0790
NC_007606:2353098:2356013235601323573411329Shigella dysenteriae Sd197, complete genomeD-serine dehydratase0790
NC_008253:2499735:2502637250263725039651329Escherichia coli 536, complete genomeD-serine dehydratase0789
NC_011750:4390000:4392540439254043938711332Escherichia coli IAI39 chromosome, complete genomeD-serine dehydratase0788
NC_017328:2516000:2519907251990725212351329Shigella flexneri 2002017 chromosome, complete genomeD-serine dehydratase0786
NC_004741:2456297:2460404246040424617321329Shigella flexneri 2a str. 2457T, complete genomeD-serine dehydratase0786
NC_004337:2478461:2482265248226524835931329Shigella flexneri 2a str. 301, complete genomeD-serine dehydratase0786
NC_010658:2529033:2533959253395925352271269Shigella boydii CDC 3083-94, complete genomeD-serine ammonia-lyase0735
NC_007613:2376974:2381236238123623824621227Shigella boydii Sb227, complete genomeD-serine dehydratase0732
NC_016446:522936:5284665284665297881323Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completeD-serine dehydratase0638
NC_016945:822229:8277598277598290811323Vibrio cholerae IEC224 chromosome II, complete sequenceD-serine dehydratase0638
NC_002506:822401:8279348279348292591326Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completeD-serine dehydratase0638
NC_009456:383819:3958593958593971841326Vibrio cholerae O395 chromosome 1, complete sequenceD-serine dehydratase0638
NC_012580:796387:8019208019208032451326Vibrio cholerae M66-2 chromosome II, complete sequenceD-serine dehydratase0638
NC_012583:861225:8667588667588680831326Vibrio cholerae O395 chromosome chromosome II, complete sequenceD-serine dehydratase0638
NC_012667:504534:5165735165735178981326Vibrio cholerae MJ-1236 chromosome 2, complete genomeD-serine dehydratase0638
NC_009901:4216206:4216206421620642175311326Shewanella pealeana ATCC 700345, complete genomeD-serine ammonia-lyase0634
NC_013941:2928000:2948507294850729495351029Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeD-serine ammonia-lyase5e-176617
NC_011770:1811874:1833311183331118346571347Pseudomonas aeruginosa LESB58, complete genomeD-serine dehydratase3e-152538
NC_013223:1349000:1350483135048313518681386Desulfohalobium retbaense DSM 5692, complete genomeD-serine ammonia-lyase2e-147522
NC_010545:2025000:2036788203678820380771290Corynebacterium urealyticum DSM 7109, complete genomeD-serine dehydratase1e-131469
NC_010610:861194:8770728770728784001329Lactobacillus fermentum IFO 3956, complete genomeD-serine dehydratase3e-108392
NC_007347:3188614:3190183319018331915141332Ralstonia eutropha JMP134 chromosome 1, complete sequenceD-serine dehydratase5e-102371
NC_015726:3280000:3292343329234332936831341Cupriavidus necator N-1 chromosome 1, complete sequenceD-serine dehydratase DsdA2e-100366
NC_008528:610070:6213536213536227741422Oenococcus oeni PSU-1, complete genomeThreonine dehydratase3e-91335
UCMB5137:1:113431134312143801Bacillus atrophaeus UCMB-5137D-serine ammonia-lyase7e-87321
UCMB5137:1:108111081111332522Bacillus atrophaeus UCMB-5137D-serine dehydratase7e-42172