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Query: NC_006512:2789098 Idiomarina loihiensis L2TR, complete genome

Start: 2789098, End: 2819901, Length: 30804

Host Lineage: Idiomarina loihiensis; Idiomarina; Idiomarinaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This is the type strain for this organism, which was isolated from a hydrothermal vent at a depth of 1300 m from the Lo'ihi Seamount southeast of Hawaii. This organism grows optimally in salt concentrations of 7.5 to 10%. Genome comparison has suggested that the bacterium has maintained its amino acid transport and degradation systems but lost sugar transport and certain sugar metabolic genes suggesting that it lives on amino acids rather than sugars. This may be in keeping with the environment this organism grows in, which is at hydrothermal deep sea vents that are characterized by collections of proteinaceous particles. This organism may colonize these particles by producing exopolysaccharides.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009052:50899635089963511024820286Shewanella baltica OS155, complete genome5e-36161BLASTN svgBLASTP svg
NC_007384:40950164095016412229027275Shigella sonnei Ss046, complete genome3e-25125BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome7e-23117BLASTN svgBLASTP svg
NC_011751:43739614373961440053726577Escherichia coli UMN026 chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_010498:41669034166903419347126569Escherichia coli SMS-3-5, complete genome4e-18101BLASTN svgBLASTP svg
NC_011750:44905734490573451714226570Escherichia coli IAI39 chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_007481:3167434*3167434319295225519Pseudoalteromonas haloplanktis TAC125 chromosome I, complete6e-1487.7BLASTN svgBLASTP svg
NC_010995:45251194525119455888733769Cellvibrio japonicus Ueda107, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_015222:386000*38600040759921600Nitrosomonas sp. AL212 chromosome, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_014328:4387303*4387303445852771225Clostridium ljungdahlii ATCC 49587 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_004545:15650*156506959953950Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome9e-0763.9BLASTN svgBLASTP svg