Pre_GI: BLASTP Hits

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Query: NC_006511:3364448:3387676 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 3387676, End: 3388089, Length: 414

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
CP002185:3627992:365099336509933651403411Escherichia coli W, complete genomemechanosensitive channel6e-49192
NC_013282:3962188:398294739829473983354408Cronobacter turicensis, complete genomeLarge-conductance mechanosensitive channel5e-45179
NC_013508:3387272:338879633887963389203408Edwardsiella tarda EIB202, complete genomelarge-conductance mechanosensitive channel3e-35147
NC_009348:1064664:106628510662851066692408Aeromonas salmonicida subsp. salmonicida A449, complete genomelarge-conductance mechanosensitive channel2e-30130
NC_011146:1429836:143905414390541439458405Geobacter bemidjiensis Bem, complete genomelarge conductance mechanosensitive channel protein2e-29127
NC_015914:621411:623555623555623974420Cyclobacterium marinum DSM 745 chromosome, complete genomeLarge-conductance mechanosensitive channel2e-26117
NC_016776:5174606:521132052113205211742423Bacteroides fragilis 638R, complete genomeputative large-conductance mechanosensitive channel4e-24110
NC_003902:3666544:373690137369013737332432Xanthomonas campestris pv. campestris str. ATCC 33913, completelarge-conductance mechanosensitive channel6e-24109
NC_005945:4473790:447379044737904474188399Bacillus anthracis str. Sterne, complete genomelarge conductance mechanosensitive channel protein2e-22103
NC_014355:220002:236105236105236533429Candidatus Nitrospira defluvii, complete genomelarge-conductance mechanosensitive channel2e-21100
NC_015684:2369651:236965123696512370067417Oligotropha carboxidovorans OM5 chromosome, complete genomelarge-conductance mechanosensitive channel MscL2e-21100
NC_018867:1161648:116164811616481162052405Dehalobacter sp. CF chromosome, complete genomeLarge-conductance mechanosensitive channel1e-1995.1
NC_010162:9727465:973099097309909731439450Sorangium cellulosum 'So ce 56', complete genomelarge conductance mechanosensitive channel3e-1890.5
NC_011992:773905:780102780102780530429Acidovorax ebreus TPSY, complete genomelarge conductance mechanosensitive channel protein3e-1787
NC_014323:4619344:464673646467364647173438Herbaspirillum seropedicae SmR1 chromosome, complete genomelarge conductance mechanosensitive channel protein3e-1787
NC_011027:1024995:104691910469191047374456Chlorobaculum parvum NCIB 8327, complete genomelarge conductance mechanosensitive channel protein5e-1786.7
NC_008254:102465:118021118021118449429Mesorhizobium sp. BNC1, complete genomelarge conductance mechanosensitive channel protein5e-1786.3
NC_010002:6104500:610880961088096109237429Delftia acidovorans SPH-1, complete genomelarge conductance mechanosensitive channel protein7e-1785.9
NC_015563:1240978:125643412564341256862429Delftia sp. Cs1-4 chromosome, complete genomelarge conductance mechanosensitive channel protein7e-1785.9
NC_017080:50000:579395793958397459Phycisphaera mikurensis NBRC 102666, complete genomelarge-conductance mechanosensitive channel1e-1685.1
NC_014834:3472000:348881234888123489222411Rhodopseudomonas palustris DX-1 chromosome, complete genomelarge conductance mechanosensitive channel protein1e-1684.7
NC_014150:648868:651967651967652431465Brachyspira murdochii DSM 12563 chromosome, complete genomelarge conductance mechanosensitive channel protein4e-1683.6
NC_010161:596034:601845601845602255411Bartonella tribocorum CIP 105476, complete genomehypothetical protein7e-1682.4
NC_014307:533975:537543537543537968426Ralstonia solanacearum CFBP2957 chromosome, complete genomelarge-conductance mechanosensitive channel1e-1582
NC_013222:2595315:261570126157012616135435Robiginitalea biformata HTCC2501, complete genomelarge conductance mechanosensitive channel protein1e-1582
NC_002678:3701500:374379037437903744212423Mesorhizobium loti MAFF303099, complete genomelarge conductance mechanosensitive channel1e-1582
NC_010682:3313944:335562233556223356050429Ralstonia pickettii 12J chromosome 1, complete sequencelarge conductance mechanosensitive channel protein1e-1581.6
NC_002678:3701500:373064737306473731081435Mesorhizobium loti MAFF303099, complete genomemechanosensitive channel1e-1581.6
NC_012856:3000839:301706730170673017495429Ralstonia pickettii 12D chromosome 1, complete genomelarge conductance mechanosensitive channel protein4e-1580.1
NC_016002:1326500:133847113384711338902432Pseudogulbenkiania sp. NH8B, complete genomelarge conductance mechanosensitive channel protein7e-1579.3
NC_014935:1668461:169005016900501690484435Nitratifractor saLSUginis DSM 16511 chromosome, complete genomelarge conductance mechanosensitive channel protein5e-1476.6
NC_002678:4618555:462994646299464630367422Mesorhizobium loti MAFF303099, complete genome5e-1476.3
NC_010814:155834:163539163539163982444Geobacter lovleyi SZ, complete genomelarge conductance mechanosensitive channel protein5e-1476.3
NC_017167:129988:134618134618135076459Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1large conductance mechanosensitive channel protein8e-1475.9
NC_014718:232832:257083257083257559477Burkholderia rhizoxinica HKI 454 chromosome, complete genomeLarge-conductance mechanosensitive channel2e-1374.3
NC_015978:352478:372607372607372981375Lactobacillus sanfranciscensis TMW 1.1304 chromosome, completeLarge-conductance mechanosensitive channel4e-1373.6
NC_015846:493388:518074518074518454381Capnocytophaga canimorsus Cc5 chromosome, complete genomeLarge-conductance mechanosensitive channel6e-1372.8
NC_013656:2382000:239589923958992396267369Lactococcus lactis subsp. lactis KF147, complete genomelarge-conductance mechanosensitive channel2e-1168.2
NC_008529:264000:266698266698267174477Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeLarge-conductance mechanosensitive channel1e-1168.2
NC_010320:1860801:186132418613241861704381Thermoanaerobacter sp. X514 chromosome, complete genomelarge conductance mechanosensitive channel protein1e-1065.1
NC_014538:1075720:109264010926401093020381Thermoanaerobacter sp. X513 chromosome, complete genomelarge conductance mechanosensitive channel protein1e-1065.1
NC_014209:1392115:140480614048061405174369Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,large conductance mechanosensitive channel protein1e-1065.1
NC_007777:75885:886998869989094396Frankia sp. CcI3, complete genomelarge conductance mechanosensitive channel protein2e-1064.3
NC_013171:1364464:138535613853561385766411Anaerococcus prevotii DSM 20548, complete genomelarge conductance mechanosensitive channel protein4e-1063.5
NC_015759:1117122:113952211395221139905384Weissella koreensis KACC 15510 chromosome, complete genomelarge conductance mechanosensitive channel protein9e-1062.4
NC_014964:923681:954603954603954971369Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completelarge conductance mechanosensitive channel protein9e-1062.4
NC_010321:947233:962410962410962778369Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completelarge conductance mechanosensitive channel protein9e-1062.4
NC_015389:905165:922842922842923309468Coriobacterium glomerans PW2 chromosome, complete genomelarge conductance mechanosensitive channel protein3e-0960.5
NC_016109:3525588:353665335366533537087435Kitasatospora setae KM-6054, complete genomeputative large-conductance mechanosensitive channel4e-0960.1
NC_013510:991827:100630710063071006711405Thermomonospora curvata DSM 43183, complete genomelarge conductance mechanosensitive channel protein4e-0960.1
NC_015145:2942500:294651629465162946926411Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomelarge conductance mechanosensitive channel protein1e-0858.9
NC_013595:9547254:955105695510569551460405Streptosporangium roseum DSM 43021, complete genomelarge conductance mechanosensitive channel protein1e-0858.2
NC_018750:3315309:332050733205073321115609Streptomyces venezuelae ATCC 10712, complete genomeLarge-conductance mechanosensitive channel6e-0856.2
NC_012467:916000:932535932535932912378Streptococcus pneumoniae P1031, complete genomelarge conductance mechanosensitive channel protein1e-0755.5
NC_013174:2163947:216573421657342166132399Jonesia denitrificans DSM 20603, complete genomelarge conductance mechanosensitive channel protein1e-0755.1
NC_011886:2950411:295657929565792956968390Arthrobacter chlorophenolicus A6, complete genomelarge conductance mechanosensitive channel protein4e-0753.5
NC_010407:32960:438054380544287483Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative mechanosensitive channel2e-0651.2
NC_017186:9120711:915435891543589154774417Amycolatopsis mediterranei S699 chromosome, complete genomelarge conductance mechanosensitive channel, MscL family protein6e-0649.7