Pre_GI: BLASTP Hits

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Query: NC_006511:3364448:3381053 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 3381053, End: 3381595, Length: 543

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010067:4149298:414877541487754149338564Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein9e-91332
CP002185:3627992:364438936443893644931543Escherichia coli W, complete genomepredicted DNA topoisomerase2e-87321
NC_013282:3962188:397628439762843976829546Cronobacter turicensis, complete genomeUncharacterized protein yrdD3e-83306
NC_002695:4153394:416643241664324166737306Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-44177
NC_008577:44184:458024580246365564Shewanella sp. ANA-3 chromosome 1, complete sequenceDNA topoisomerase, type IA, zn finger domain protein8e-41166
NC_017512:2116295:2132864213286421351702307Neisseria meningitidis WUE 2594, complete genomeDNA topoisomerase I (Omega-protein; relaxing enzyme; untwisting enzyme; swivelase)7e-37153
NC_010120:2055803:2072374207237420746202247Neisseria meningitidis 053442, complete genomeDNA topoisomerase I9e-37152
NC_013016:2041890:2058461205846120607672307Neisseria meningitidis alpha14 chromosome, complete genomeDNA topoisomerase I8e-37152
NC_017501:121902:1250161250161273222307Neisseria meningitidis 8013, complete genomeDNA topoisomerase I (Omega-protein; relaxing enzyme; untwisting enzyme; swivelase)8e-37152
NC_017513:115870:1189841189841212902307Neisseria meningitidis G2136 chromosome, complete genomeDNA topoisomerase I1e-35149
NC_017516:123618:1267381267381290442307Neisseria meningitidis H44/76 chromosome, complete genomeDNA topoisomerase I3e-35147
NC_014483:1973233:1996730199673019988322103Paenibacillus polymyxa E681 chromosome, complete genomeDNA topoisomerase I1e-24112
NC_012471:1197534:1197534119753411996662133Streptococcus equi subsp. equi 4047, complete genomeDNA topoisomerase I6e-24110
NC_019978:625476:6254766254766275422067Halobacteroides halobius DSM 5150, complete genomeDNA topoisomerase I, bacterial2e-23108
NC_013939:1812259:1820786182078618231222337Deferribacter desulfuricans SSM1, complete genomeDNA topoisomerase I1e-22105
NC_016826:929259:9292599292599313972139Streptococcus infantarius subsp. infantarius CJ18 chromosome,DNA topoisomerase I2e-22104
NC_004461:921364:9261999261999282682070Staphylococcus epidermidis ATCC 12228, complete genomeDNA topoisomerase I7e-22103
NC_013199:1407742:1424521142452114266052085Lactobacillus rhamnosus Lc 705, complete genomeDNA topoisomerase 1 (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Untwisting enzyme) (Swivelase)1e-21102
NC_013171:1364464:1386195138619513882492055Anaerococcus prevotii DSM 20548, complete genomeDNA topoisomerase I5e-21100
NC_016024:1185388:1193619119361911961502532Candidatus Chloracidobacterium thermophilum B chromosome chromosomeDNA topoisomerase I7e-21100
NC_017208:3816753:3848412384841238504902079Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA topoisomerase I1e-2099.4
NC_000909:1615927:1633490163349016357752286Methanocaldococcus jannaschii DSM 2661, complete genomeDNA topoisomerase I1e-2099
NC_002163:1607360:1607360160736016094622103Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeDNA topoisomerase I3e-2097.8
NC_003912:1742370:1743208174320817453102103Campylobacter jejuni RM1221, complete genomeDNA topoisomerase I3e-2097.8
NC_017279:1603916:1604754160475416068562103Campylobacter jejuni subsp. jejuni IA3902 chromosome, completeDNA topoisomerase I3e-2097.8
NC_017281:1645903:1646741164674116488432103Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomeDNA topoisomerase I3e-2097.8
NC_007168:1705763:1717736171773617198052070Staphylococcus haemolyticus JCSC1435, complete genomeDNA topoisomerase I8e-2096.7
NC_014171:3726054:3732277373227737342321956Bacillus thuringiensis BMB171 chromosome, complete genomeDNA topoisomerase I3e-1994.7
NC_003997:3617000:3648303364830336503812079Bacillus anthracis str. Ames, complete genomeDNA topoisomerase I3e-1994.7
NC_014335:3589726:3599157359915736012352079Bacillus cereus biovar anthracis str. CI chromosome, completeDNA topoisomerase I3e-1994.7
NC_007530:3616828:3648430364843036505082079Bacillus anthracis str. 'Ames Ancestor', complete genomeDNA topoisomerase I3e-1994.7
NC_005945:3636321:3648998364899836510762079Bacillus anthracis str. Sterne, complete genomeDNA topoisomerase I3e-1994.7
NC_012581:559182:5881795881795902572079Bacillus anthracis str. CDC 684 chromosome, complete genomeDNA topoisomerase I3e-1994.7
NC_012659:3617000:3648330364833036504082079Bacillus anthracis str. A0248, complete genomeDNA topoisomerase I3e-1994.7
NC_005957:3665657:3669976366997636720542079Bacillus thuringiensis serovar konkukian str. 97-27, completeDNA topoisomerase I3e-1994.7
NC_003909:3606177:3623701362370136257792079Bacillus cereus ATCC 10987, complete genomeDNA topoisomerase I3e-1994.7
NC_011658:3603009:3636348363634836384262079Bacillus cereus AH187 chromosome, complete genomeDNA topoisomerase I3e-1994.7
NC_011969:3575988:3580307358030735820881782Bacillus cereus Q1 chromosome, complete genomeDNA topoisomerase i5e-1994
NC_014328:1379437:1397670139767013997782109Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeDNA topoisomerase I2e-1891.7
NC_014377:1060000:1063372106337210654562085Thermosediminibacter oceani DSM 16646 chromosome, complete genomeDNA topoisomerase I2e-1891.7
NC_013216:1219775:1240668124066812427612094Desulfotomaculum acetoxidans DSM 771, complete genomeDNA topoisomerase I9e-1889.7
NC_015562:785959:7978537978538017463894Methanotorris igneus Kol 5 chromosome, complete genomeDNA topoisomerase I1e-1789.4
NC_014960:1735786:1787054178705417893842331Anaerolinea thermophila UNI-1, complete genomeDNA topoisomerase I4e-1787.8
NC_014624:2297000:2318259231825923203372079Eubacterium limosum KIST612 chromosome, complete genomeDNA topoisomerase I1e-1686.3
NC_017294:758992:7634607634607654241965Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeDNA topoisomerase1e-1685.9
NC_019908:1043401:1043401104340110455062106Brachyspira pilosicoli P43/6/78 chromosome, complete genomeDNA topoisomerase I2e-1582
NC_014721:434501:4437644437644458452082Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeDNA topoisomerase i5e-1580.5
NC_020291:1437431:1454960145496014570532094Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeDNA topoisomerase 11e-1479.7
NC_014652:628435:6284356284356305162082Caldicellulosiruptor hydrothermalis 108 chromosome, completeDNA topoisomerase i2e-1478.6
NC_012673:1046016:1071677107167710745712895Exiguobacterium sp. AT1b, complete genomeUvrD/REP helicase1e-1375.9
NC_015389:481282:4974704974705000792610Coriobacterium glomerans PW2 chromosome, complete genomeDNA topoisomerase I1e-1272.8
NC_014314:576465:6598176598176619132097Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeDNA topoisomerase I1e-1066.2
NC_014833:3444550:3457053345705334591582106Ruminococcus albus 7 chromosome, complete genomeDNA topoisomerase I1e-1066.2
NC_009012:574145:5741455741455762532109Clostridium thermocellum ATCC 27405, complete genomeDNA topoisomerase I2e-1065.5
NC_015954:2405527:2429355242935524319702616Halophilic archaeon DL31 chromosome, complete genomeDNA topoisomerase2e-0962.4
NC_017080:3317701:3321670332167033243992730Phycisphaera mikurensis NBRC 102666, complete genomeDNA topoisomerase I3e-0961.2
NC_009720:3281000:328711432871143287626513Xanthobacter autotrophicus Py2, complete genomeDNA topoisomerase type IA Zn finger domain-containing protein1e-0859.3
NC_008209:2367500:2369250236925023720002751Roseobacter denitrificans OCh 114, complete genomehelicase IV2e-0858.9
NC_013926:321122:3378463378463400892244Aciduliprofundum boonei T469 chromosome, complete genomeDNA topoisomerase I1e-0858.9
NC_011586:268927:2800162800162820342019Acinetobacter baumannii AB0057 chromosome, complete genomeDNA topoisomerase I1e-0755.8
NC_010688:2781624:2806727280672728087392013Xanthomonas campestris pv. campestris, complete genomeDNA topoisomerase III2e-0652.4
NC_010170:1498253:1502488150248815045002013Bordetella petrii, complete genomeDNA topoisomerase III2e-0652.4
NC_007086:2477040:2477040247704024790522013Xanthomonas campestris pv. campestris str. 8004, complete genomeDNA topoisomerase I2e-0652.4
NC_020389:3106847:3125765312576531280232259Methanosarcina mazei Tuc01, complete genomeDNA topoisomerase I2e-0652
NC_007517:1998342:2012333201233320134001068Geobacter metallireducens GS-15, complete genomeDNA topoisomerase I:Restriction endonuclease6e-0650.4
NC_016593:1466226:149371714937171494505789Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeNERD domain-containing protein8e-0650.1