Pre_GI: BLASTP Hits

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Query: NC_006511:2677964:2692418 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 2692418, End: 2692759, Length: 342

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:2676972:268795426879542688295342Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein3e-60229
NC_003198:4453457:450419545041954504536342Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-60229
NC_011601:846358:857732857732858073342Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-51200
NC_011742:2823000:282766828276682828009342Escherichia coli S88 chromosome, complete genomehypothetical protein1e-50198
NC_003197:2870268:287407028740702874411342Salmonella typhimurium LT2, complete genomehypothetical protein2e-50197
NC_011149:2802199:281706428170642817405342Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein2e-50197
NC_011205:2938356:295225629522562952597342Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-50197
NC_016860:2896254:289763628976362897977342Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-50197
NC_009436:1466580:147921414792141479555342Enterobacter sp. 638, complete genomehypothetical protein1e-50197
NC_016810:2871689:288500728850072885348342Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein1e-48191
NC_016857:2871689:288500728850072885348342Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein1e-48191
NC_017046:2869873:288374928837492884090342Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein1e-48191
NC_010694:614985:630974630974631315342Erwinia tasmaniensis, complete genomeprophage protein4e-48189
NC_020260:312805:320661320661321002342Cronobacter sakazakii Sp291, complete genomeputative prophage protein7e-48188
NC_009648:3803622:383193238319323832270339Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage protein7e-38155
NC_009436:3807420:381144838114483811786339Enterobacter sp. 638, complete genomehypothetical protein5e-36149
NC_014306:1244721:125070412507041251045342Erwinia billingiae Eb661, complete genomeprophage protein2e-34144
NC_014837:3766426:378060537806053780943339Pantoea sp. At-9b chromosome, complete genomeputative prophage protein5e-30129
NC_014837:2458780:247181324718132472154342Pantoea sp. At-9b chromosome, complete genomehypothetical protein1e-29128
NC_014562:2871765:287582828758282876133306Pantoea vagans C9-1 chromosome, complete genomehypothetical protein1e-26118
NC_020418:3022891:303784130378413038188348Morganella morganii subsp. morganii KT, complete genomehypothetical protein9e-1785.5