Pre_GI: BLASTP Hits

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Query: NC_006511:2677964:2691890 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 2691890, End: 2692117, Length: 228

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:2676972:268742626874262687653228Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein9e-30128
NC_011149:2802199:281653628165362816763228Salmonella enterica subsp. enterica serovar Agona str. SL483,C4-type zinc finger protein, DksA/TraR family1e-29128
NC_003197:2870268:287354228735422873769228Salmonella typhimurium LT2, complete genomehypothetical protein1e-29128
NC_011205:2938356:295172829517282951955228Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853DksA/TraR family protein1e-29128
NC_016860:2896254:289710828971082897335228Salmonella enterica subsp. enterica serovar Typhimurium strC4-type zinc finger protein, DksA/TraR family1e-29128
NC_003198:4453457:450366745036674503894228Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-30128
NC_020260:312805:321303321303321530228Cronobacter sakazakii Sp291, complete genomehypothetical protein2e-28124
NC_011601:846358:858374858374858601228Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeTraR/DksA family transcriptional regulator1e-25114
NC_011742:2823000:282714028271402827367228Escherichia coli S88 chromosome, complete genomeDksA/TraR protein family with a zinc finger1e-24111
NC_009436:1466580:147985914798591480086228Enterobacter sp. 638, complete genomeTraR/DksA family transcriptional regulator3e-22103
NC_016810:2871689:288448528844852884712228Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein2e-1787.8
NC_013282:3389619:340304934030493403273225Cronobacter turicensis, complete genomeUncharacterized 8.5 kDa protein in gpA 5'region3e-1684
NC_016845:4046142:405365340536534053880228Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein7e-1579.3
NC_013956:3525711:354118635411863541413228Pantoea ananatis LMG 20103 chromosome, complete genomeCP809e-1475.5
NC_009648:3803622:383141638314163831637222Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage protein2e-1374.7
NC_009436:3807420:381093238109323811153222Enterobacter sp. 638, complete genomeTraR/DksA family transcriptional regulator3e-1373.6
NC_020181:5182568:519321951932195193440222Enterobacter aerogenes EA1509E, complete genomeHypothetical Zinc-finger containing protein9e-1268.9
NC_014837:3766426:378008137800813780308228Pantoea sp. At-9b chromosome, complete genomeTraR/DksA family transcriptional regulator3e-1167
NC_014837:2458780:247245224724522472676225Pantoea sp. At-9b chromosome, complete genomeTraR/DksA family transcriptional regulator1e-1065.5
NC_012917:3565268:357993435799343580158225Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, TraR/DksA family6e-1062.8
NC_015061:596247:614243614243614467225Rahnella sp. Y9602 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family3e-0960.5
NC_017047:4037674:404784940478494048073225Rahnella aquatilis HX2 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family1e-0858.5
NC_014306:1244721:125134012513401251567228Erwinia billingiae Eb661, complete genomehypothetical protein9e-0855.5